View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1703_low_12 (Length: 244)
Name: NF1703_low_12
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 34835441 - 34835655
Alignment:
| Q |
11 |
aagaatatcacctggacgtcgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttg |
110 |
Q |
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| T |
34835441 |
aagaatatcacccggacgccgtggaccgttattaattgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttg |
34835540 |
T |
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| Q |
111 |
gtctgcatctgttcaacaaatgaatcaattgaaatcatcttgatcttaataaattgaagnnnnnnngtgtaaagcatgaaatgtacttacagaagcccat |
210 |
Q |
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| T |
34835541 |
gtctgcatctgttcaacaaatgaatcaattgaaatcatcttgatcttaataaattgaagaaaaaaagtgtaaagcatgaaatgtacttacagaagcccat |
34835640 |
T |
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| Q |
211 |
ctataaacaattggg |
225 |
Q |
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| T |
34835641 |
ctataaacaattggg |
34835655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 34821372 - 34821413
Alignment:
| Q |
184 |
gcatgaaatgtacttacagaagcccatctataaacaattggg |
225 |
Q |
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| T |
34821372 |
gcatgaagtgtacttacagaagcccatctataaacaattggg |
34821413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 35336366 - 35336285
Alignment:
| Q |
45 |
attgtgttccaagcataatcaaatgtactcagcagttgagattctgtttgcaaagcatctcccttggtctgcatctgttcaa |
126 |
Q |
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| T |
35336366 |
attgtgttccatgcataatcaaatgtactaagcagctgtgattctgttctcagggcatctccctcattttgcatctgttcaa |
35336285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 35335534 - 35335500
Alignment:
| Q |
191 |
atgtacttacagaagcccatctataaacaattggg |
225 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
35335534 |
atgtacttacaggagcccatctataaacaattggg |
35335500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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