View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1703_low_16 (Length: 236)
Name: NF1703_low_16
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_16 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: scaffold0279 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 21141 - 20934
Alignment:
| Q |
15 |
ataattctagagagtagagatgaaatcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaattttcttagcttgtacgccaagc |
114 |
Q |
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| T |
21141 |
ataatactagagagtagagatgaaatcgtatgttgtattcgaaatgaaaattacctcagcatctccttccatcctaactttcttagcttgtacgccaagc |
21042 |
T |
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| Q |
115 |
aaatctatcgtggtaagagataaaaattaatatca-taacatattacaatgattaggaaatcacaaaatgactcaaattatgcatcaccttggttgactg |
213 |
Q |
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|||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21041 |
aaatctatcgtggtaagagatagaatttaatatcagtaacatattacaatgattaggaaatcacaaaatgactcaaattatgcatcaccttggttaactg |
20942 |
T |
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| Q |
214 |
caataact |
221 |
Q |
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|||||||| |
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| T |
20941 |
caataact |
20934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 27527260 - 27527053
Alignment:
| Q |
15 |
ataattctagagagtagagatgaaatcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaattttcttagcttgtacgccaagc |
114 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
27527260 |
ataatactagagagtagagatgaaatcgtatgttgtattcgaaatgaaaattacctcagcatctccttccatcctaactttcttagcttgtacgccaagc |
27527161 |
T |
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| Q |
115 |
aaatctatcgtggtaagagataaaaattaatatca-taacatattacaatgattaggaaatcacaaaatgactcaaattatgcatcaccttggttgactg |
213 |
Q |
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| T |
27527160 |
aaatctatcgtggtaagagatagaatttaatatcagtaacatattacaatgattaggaaatcacaaaatgactcaaattatgcatcaccttggttaactg |
27527061 |
T |
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| Q |
214 |
caataact |
221 |
Q |
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|||||||| |
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| T |
27527060 |
caataact |
27527053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 27533017 - 27532823
Alignment:
| Q |
31 |
gagatgaaatcgtatattgtattcgaaatgaaaattacctcagcatcaccttccatcctaattttcttagcttgtacgccaagcaaatctatcgtgg--t |
128 |
Q |
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|||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| | |
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| T |
27533017 |
gagaagaaatcgtatgttgtattcggaatgaaaattacctcagcatcaccttccatcctaacctttttagcttgtacgccaagcgaatctatcgtgtgat |
27532918 |
T |
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| Q |
129 |
aagagataaaaattaatatca-taac--atattaca-atgattaggaaatcacaaaatgactcaaattatgcatcaccttggttgactgcaataact |
221 |
Q |
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| T |
27532917 |
aaaagatataacataatatcagtaacgtatattacatatgattagaaaatcgcaaaatgac--aaattatgcatcaccttggttaactgcaataact |
27532823 |
T |
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