View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1703_low_19 (Length: 235)
Name: NF1703_low_19
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_19 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5717062 - 5716830
Alignment:
| Q |
1 |
agttgtattaatgtggagttgaagtcttgaaaattgtggaggatgaggattgaagtgaagataatggaaatgacccttgcttaaacctgtcacgtggcct |
100 |
Q |
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| T |
5717062 |
agttgtattaatgtggagttgaagtcttgaaaattgtggaggatgaggattgaagtgaagataatggaaatgacccttgcttaa-cctgtcacgtggcct |
5716964 |
T |
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| Q |
101 |
caactcccaattataattctatcttggaacaatctttaaggatttctttctacaccactagattctaagtttaagctatgtggacctcaatcggttttct |
200 |
Q |
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| T |
5716963 |
caactcc-aattataattctatcttggaacaatctttaaggatttctttctacaccactagattctaagtttaagctatgtggacctcaatcggttttct |
5716865 |
T |
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| Q |
201 |
gtcaattatcacactaccatgtgtattgtactttc |
235 |
Q |
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| T |
5716864 |
gtcaattatcacactaccatgtgtactgtactttc |
5716830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5683583 - 5683360
Alignment:
| Q |
1 |
agttgtattaatgtggagttgaagtcttgaaaattgtggaggatgaggattgaagtgaagataatggaaatgacccttgcttaaacctgtcacgtggcct |
100 |
Q |
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| T |
5683583 |
agttgtgttaatgtggaattgaaggcttgaaaactgtggaggatgaagattgaactgtagataatggaa-tgacccttgcttaaacctgtcacgaggctt |
5683485 |
T |
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| Q |
101 |
caactcccaattataattctatcttggaacaatctttaaggatttctttctacaccactagattctaagtttaagctatgtggacctcaatcggttttct |
200 |
Q |
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| T |
5683484 |
caactctcatttataattctttcttggaacaatctttaaggatttctttctacaccaccagattctaagtttaagccatgtggaccttgatcggttttct |
5683385 |
T |
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| Q |
201 |
gtcaattatcacactaccatgtgta |
225 |
Q |
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| T |
5683384 |
gtcaactattacacttccatctgta |
5683360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 5735258 - 5735173
Alignment:
| Q |
137 |
taaggatttctttctacaccacta---gattctaagtttaagctatgtgg-acctcaatcggttttctgtcaattatcacactacc |
218 |
Q |
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| T |
5735258 |
taaggatttctttctacaccaccacctgattctaagtttaagctatgtgggacctcaatcggttttcgatcaactatcacactacc |
5735173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 5736839 - 5736811
Alignment:
| Q |
112 |
tataattctatcttggaacaatctttaag |
140 |
Q |
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| T |
5736839 |
tataattctatcttggaacaatctttaag |
5736811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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