View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1703_low_2 (Length: 420)

Name: NF1703_low_2
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1703_low_2
NF1703_low_2
[»] chr7 (4 HSPs)
chr7 (58-409)||(11888341-11888688)
chr7 (279-334)||(7879718-7879773)
chr7 (279-334)||(40463956-40464011)
chr7 (279-334)||(38262196-38262251)
[»] chr4 (9 HSPs)
chr4 (273-333)||(40553931-40553991)
chr4 (277-334)||(38755906-38755963)
chr4 (278-334)||(44363129-44363185)
chr4 (279-334)||(5648338-5648393)
chr4 (279-334)||(20639658-20639713)
chr4 (280-330)||(40915912-40915962)
chr4 (277-334)||(11394932-11394989)
chr4 (277-334)||(11404659-11404716)
chr4 (279-332)||(54730334-54730387)
[»] chr6 (3 HSPs)
chr6 (279-334)||(6808475-6808530)
chr6 (279-334)||(13267805-13267860)
chr6 (279-334)||(29355855-29355910)
[»] chr8 (4 HSPs)
chr8 (276-334)||(13160781-13160839)
chr8 (279-334)||(35107311-35107366)
chr8 (279-333)||(39460994-39461048)
chr8 (280-334)||(45071344-45071398)
[»] chr2 (7 HSPs)
chr2 (278-334)||(14530400-14530456)
chr2 (279-334)||(9671259-9671314)
chr2 (279-334)||(10543780-10543835)
chr2 (279-334)||(10546243-10546298)
chr2 (278-337)||(14544143-14544202)
chr2 (280-334)||(40579750-40579804)
chr2 (281-334)||(41409942-41409995)
[»] chr1 (5 HSPs)
chr1 (278-334)||(4349741-4349797)
chr1 (279-334)||(27474383-27474438)
chr1 (290-334)||(4587574-4587618)
chr1 (274-334)||(30395721-30395781)
chr1 (290-334)||(31442400-31442444)
[»] scaffold0057 (1 HSPs)
scaffold0057 (279-334)||(46911-46966)
[»] chr5 (5 HSPs)
chr5 (279-334)||(16957394-16957449)
chr5 (279-334)||(25622540-25622595)
chr5 (279-330)||(32354211-32354262)
chr5 (279-334)||(38879663-38879718)
chr5 (290-334)||(3771419-3771463)
[»] chr3 (6 HSPs)
chr3 (279-334)||(13628790-13628845)
chr3 (279-334)||(16735542-16735597)
chr3 (279-334)||(40272812-40272867)
chr3 (279-334)||(54484793-54484848)
chr3 (280-334)||(22609867-22609921)
chr3 (278-334)||(10795422-10795478)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 58 - 409
Target Start/End: Complemental strand, 11888688 - 11888341
Alignment:
Q  58 tatagaaccatacctttgtcttctcatcgactttgtgaagctcatcgtacaagtttctatcacctctaaaggaagccaaagcatcccaaatagaattggt 157  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11888688 tatagaactatacctttgtcttctcatcgactttgtgaagctcatcgtacaaatttctatcacctctaaaggaagccaaagcatcccaaatagaattggt 11888589  T
Q  158 ttgaattttggagtacttatcctcaacatatgtgagatcaatggacgggaaaaggcttgatgggagattcatctgacaaataatatatattacatgaaaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11888588 ttgaattttggagtacttatcctcaacatatgtgagatcaatggacgggaaaaggcttgatgggagattcatctgacaaataatatatattacatgaaaa 11888489  T
Q  258 cataattcacactgttaaattaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtccgacggttagattaatcaactaaa 357  Q
    |||||||||     ||||||||||||||||  | ||||||||||||||| ||| |||||| |||| | ||||||||| || ||| |||||||||||||||    
T  11888488 cataattca-----ttaaattaaagggcaacccagtgcactgaagctcctgcatacacagggtccagaaaggggtcccactgttcgattaatcaactaaa 11888394  T
Q  358 atgccatgaatgatatgtatggtgcaaga-tacaaaccttagttaatgatatt 409  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  11888393 atgccatgaatgatatgtatggtgcaagattacaaaccttagttaacgatatt 11888341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 7879773 - 7879718
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||||||||||||||| || ||| ||||||||||||||||    
T  7879773 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcc 7879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 40464011 - 40463956
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||| |||||||||||||||||||||| || ||| ||||| ||||||||||    
T  40464011 aaagggcaactcggtgcactgaagctcccgcatacgcagggtccgagaaggggtcc 40463956  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 38262196 - 38262251
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || |||||| |||||||||||||    
T  38262196 aaagggcaatccggtgcactaaagctcccgcatacgcagtgttcgggaaggggtcc 38262251  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 40553931 - 40553991
Alignment:
Q  273 taaattaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtc 333  Q
    |||||||||||||||  ||||||||| ||||||||||| || ||| |||||||||||||||    
T  40553931 taaattaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtc 40553991  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 38755906 - 38755963
Alignment:
Q  277 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  38755906 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 38755963  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 44363129 - 44363185
Alignment:
Q  278 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  44363129 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 44363185  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 5648393 - 5648338
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  | ||||||||||||||||||| || ||| ||||||||||||||||    
T  5648393 aaagggcaacccagtgcactgaagctcccgcatacgcagggtccgggaaggggtcc 5648338  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 20639658 - 20639713
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  20639658 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 20639713  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 40915962 - 40915912
Alignment:
Q  280 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggg 330  Q
    ||||||||  ||||||||||||||||||||| || ||| ||||||||||||    
T  40915962 aagggcaatccggtgcactgaagctcccgcatacgcagggtccgggaaggg 40915912  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 11394989 - 11394932
Alignment:
Q  277 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||||  ||||||||| ||||||||||| || ||| |||||| |||||||||    
T  11394989 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcc 11394932  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 11404716 - 11404659
Alignment:
Q  277 ttaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||||  ||||||||| ||||||||||| || ||| |||||| |||||||||    
T  11404716 ttaaagggcaacccggtgcactaaagctcccgcatacgcagggtccggaaaggggtcc 11404659  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 54730387 - 54730334
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggt 332  Q
    |||||| || |||||||||| ||||||||||| || ||| ||||||||||||||    
T  54730387 aaagggtaattcggtgcactaaagctcccgcatacgcagggtccgggaaggggt 54730334  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 6808530 - 6808475
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  6808530 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggggtcc 6808475  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 13267860 - 13267805
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||||||||||||||| || ||| |||| |||||||||||    
T  13267860 aaagggcaacccggtgcactgaagctcccgcatacgcagggtccaggaaggggtcc 13267805  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 29355855 - 29355910
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  29355855 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 29355910  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 13160839 - 13160781
Alignment:
Q  276 attaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||||||  ||| ||||||||||||||||| || ||| ||||||||||||||||    
T  13160839 attaaagggcaacccggcgcactgaagctcccgcatacgcagggtccgggaaggggtcc 13160781  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 35107311 - 35107366
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||| ||||| |||||| ||||||||||||||||    
T  35107311 aaagggcaacccggtgcactaaagcttccgcatacacagcgtccgggaaggggtcc 35107366  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 39460994 - 39461048
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtc 333  Q
    |||||||||  ||||||||| ||||||||||| || ||| |||||||||||||||    
T  39460994 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtc 39461048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 45071398 - 45071344
Alignment:
Q  280 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||  ||||||||||||||||||||| || ||  ||||||||||||||||    
T  45071398 aagggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcc 45071344  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 14530456 - 14530400
Alignment:
Q  278 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  14530456 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 14530400  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 9671314 - 9671259
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  9671314 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 9671259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 10543835 - 10543780
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  10543835 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 10543780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 10546298 - 10546243
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  10546298 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 10546243  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 14544202 - 14544143
Alignment:
Q  278 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtccgac 337  Q
    |||||||||| | |||||||| ||||||||||| || ||| |||| ||||||||||||||    
T  14544202 taaagggcaacttggtgcactaaagctcccgcatacgcagggtcccggaaggggtccgac 14544143  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 40579750 - 40579804
Alignment:
Q  280 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  40579750 aagggcaacccggtgcactaaagctcccgcatactcagggtccgggaaggggtcc 40579804  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 41409995 - 41409942
Alignment:
Q  281 agggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||  ||||||||||||||||||||| |  ||| ||||||||||||||||    
T  41409995 agggcaacccggtgcactgaagctcccgcatatgcagggtccgggaaggggtcc 41409942  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 4349797 - 4349741
Alignment:
Q  278 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  4349797 taaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 4349741  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 27474438 - 27474383
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  27474438 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 27474383  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 4587574 - 4587618
Alignment:
Q  290 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||    
T  4587574 cggtgcactgaagctcccgcataggcagggtccgggaaggggtcc 4587618  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 30395721 - 30395781
Alignment:
Q  274 aaattaaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||| ||||||||| |||||||||| ||||||||||| |  | | ||||||||||||||||    
T  30395721 aaataaaagggcaactcggtgcactaaagctcccgcatatgcggggtccgggaaggggtcc 30395781  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 31442400 - 31442444
Alignment:
Q  290 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||  |||||||| || |||||||||||||||||||||||    
T  31442400 cggtgcaccaaagctcccacatacacagtgtccgggaaggggtcc 31442444  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 46966 - 46911
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  46966 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 46911  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 16957449 - 16957394
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  16957449 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 16957394  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 25622595 - 25622540
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  25622595 aaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 25622540  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 32354262 - 32354211
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggg 330  Q
    |||||||||  ||||||||| ||||||||||| |||||| ||||||||||||    
T  32354262 aaagggcaacccggtgcactaaagctcccgcatacacagggtccgggaaggg 32354211  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 38879718 - 38879663
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  38879718 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 38879663  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 3771463 - 3771419
Alignment:
Q  290 cggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||| |||||||| || |||||| ||||||||||||||||    
T  3771463 cggtgcactaaagctcccacatacacagagtccgggaaggggtcc 3771419  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 13628790 - 13628845
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  13628790 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 13628845  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 16735597 - 16735542
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  | ||||||||||||| ||||| || ||||||||||||||||||||    
T  16735597 aaagggcaacccagtgcactgaagctaccgcatacgcagtgtccgggaaggggtcc 16735542  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 40272812 - 40272867
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  40272812 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 40272867  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 54484848 - 54484793
Alignment:
Q  279 aaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    |||||||||  ||||||||| ||||||||||| || ||| ||||||||||||||||    
T  54484848 aaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcc 54484793  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 22609921 - 22609867
Alignment:
Q  280 aagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||  ||||||||||||||||||||| || ||  ||||||||||||||||    
T  22609921 aagggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcc 22609867  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 10795422 - 10795478
Alignment:
Q  278 taaagggcaagtcggtgcactgaagctcccgcacacacagtgtccgggaaggggtcc 334  Q
    ||||||||||   |||||||||||||||||||| || ||| |||| |||||||||||    
T  10795422 taaagggcaacctggtgcactgaagctcccgcatacgcagggtccaggaaggggtcc 10795478  T

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