View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1703_low_4 (Length: 377)

Name: NF1703_low_4
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1703_low_4
NF1703_low_4
[»] chr2 (5 HSPs)
chr2 (10-361)||(41949671-41950022)
chr2 (291-335)||(3101191-3101235)
chr2 (291-355)||(3102580-3102644)
chr2 (291-355)||(11393485-11393549)
chr2 (291-355)||(11410146-11410210)
[»] chr8 (7 HSPs)
chr8 (283-349)||(29699133-29699199)
chr8 (291-355)||(6918918-6918982)
chr8 (279-349)||(27754558-27754628)
chr8 (291-349)||(35220826-35220884)
chr8 (312-348)||(787232-787268)
chr8 (287-339)||(6950219-6950271)
chr8 (285-349)||(8062121-8062185)
[»] chr1 (2 HSPs)
chr1 (279-348)||(49365914-49365983)
chr1 (285-349)||(24263264-24263328)
[»] chr5 (4 HSPs)
chr5 (305-355)||(20982254-20982304)
chr5 (313-349)||(3951526-3951562)
chr5 (297-349)||(14716595-14716647)
chr5 (291-355)||(26516185-26516249)
[»] chr6 (5 HSPs)
chr6 (312-349)||(32386688-32386725)
chr6 (305-349)||(18264232-18264276)
chr6 (312-355)||(32386218-32386261)
chr6 (305-355)||(3217309-3217359)
chr6 (291-355)||(4003719-4003783)
[»] chr4 (4 HSPs)
chr4 (305-354)||(7342091-7342140)
chr4 (291-345)||(18512548-18512602)
chr4 (291-349)||(33640995-33641053)
chr4 (291-347)||(6360832-6360888)
[»] scaffold0590 (1 HSPs)
scaffold0590 (291-355)||(1193-1257)
[»] scaffold0275 (1 HSPs)
scaffold0275 (291-355)||(2718-2782)
[»] chr7 (3 HSPs)
chr7 (279-347)||(5630042-5630110)
chr7 (291-355)||(27481413-27481477)
chr7 (300-346)||(47003983-47004029)
[»] chr3 (4 HSPs)
chr3 (300-338)||(23785149-23785187)
chr3 (300-349)||(1288922-1288971)
chr3 (300-349)||(52324002-52324051)
chr3 (291-347)||(32417255-32417310)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 361
Target Start/End: Original strand, 41949671 - 41950022
Alignment:
Q  10 caatgagctaaggcgacatattgttctattaaattctctacggttccaccactccactcctttgatagttatgaaatgatccacnnnnnnnactttgtcc 109  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  41949671 caatgagctaaggcgatgtattgttctattaaattctctatggttccaccactccactcctttgatagttatgaaatgatccactttttttactttgtcc 41949770  T
Q  110 cattttattctctttataaaatattaaccatatggattcttacatccaccattatttctagtagatagaatataacctattatatagaaatcaggacgct 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41949771 cattttattctcttaataaaatattaaccatatggattcttacatgcaccattatttctagtagatagaatataacctattatatagaaatcaggacgct 41949870  T
Q  210 cttgggaacacaacagtagaactcattatttaggaacagtagattgattgattatgtaaatagtatatgaggctctatttagataagcagcttagttaag 309  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41949871 ctagggaacacaacagtagaactcattatttaggaacagtagatggattgattatgtaaatagtatatgaggctctatttagataagcagcttagttaag 41949970  T
Q  310 tgcttataggataaatgtttatcatataagtgcttatgtagaagcttcttat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41949971 tgcttataggataaatgtttatcatataagtgcttatgtagaagcttcttat 41950022  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 3101235 - 3101191
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcata 335  Q
    ||||||||||||| |||||| ||||||| ||||||| ||||||||    
T  3101235 gataagcagcttaattaagtccttatagcataaatgcttatcata 3101191  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 3102580 - 3102644
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| ||||||  ||||| ||||| |  ||||||||||||||||||| |||||||||| |||||    
T  3102580 gataaacagctttattaagcgcttaaaacataaatgtttatcatataactgcttatgtataagct 3102644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 11393549 - 11393485
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| ||||||| |||||  ||||||| | || |||||||||||||||||||||| || |||||    
T  11393549 gataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagct 11393485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 11410210 - 11410146
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| ||||||| |||||  ||||||| | || |||||||||||||||||||||| || |||||    
T  11410210 gataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagct 11410146  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 29699133 - 29699199
Alignment:
Q  283 tctatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||||| ||||| |  ||||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  29699133 tctatttggataaacgacttagttaagtgcttatagcataaatatttatcatataaatgcttatgta 29699199  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 6918918 - 6918982
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| ||||||| |||||||  ||||| |||| ||||||||||||||||||||||||| |||||    
T  6918918 gataaacagcttacttaagtgtctatagcataagtgtttatcatataagtgcttatgtataagct 6918982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 27754628 - 27754558
Alignment:
Q  279 aggctctatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||||| ||| | |||||| |||| ||||||| |||||| ||||| | ||||||| ||||||||||||||    
T  27754628 aggctctgtttgggtaagcaacttaattaagtgtttatagtataaacgcttatcatttaagtgcttatgta 27754558  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 35220884 - 35220826
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||| ||||||| |||| | |||| ||||||| || ||||||||||||||||||||||    
T  35220884 gataaacagcttaattaaatacttacaggataagtgattatcatataagtgcttatgta 35220826  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 787268 - 787232
Alignment:
Q  312 cttataggataaatgtttatcatataagtgcttatgt 348  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  787268 cttatagcataaatgtttatcatctaagtgcttatgt 787232  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 6950219 - 6950271
Alignment:
Q  287 tttagataagcagcttagttaagtgcttataggataaatgtttatcatataag 339  Q
    ||||||||| || |||| |||||||||||||| ||||| | ||||||||||||    
T  6950219 tttagataaacaacttaattaagtgcttatagcataaacgcttatcatataag 6950271  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 8062121 - 8062185
Alignment:
Q  285 tatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||| |||||||| |||| ||||| |||||||  ||||  |||||||||| |||||||||||||    
T  8062121 tatttggataagcaacttaattaagcgcttatactataagcgtttatcatagaagtgcttatgta 8062185  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 49365983 - 49365914
Alignment:
Q  279 aggctctatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgt 348  Q
    ||||||| ||| ||||| || |||||||||| |||||||| ||||| |||||| ||||||||||||||||    
T  49365983 aggctctgtttggataaacaacttagttaagcgcttatagcataaacgtttataatataagtgcttatgt 49365914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 24263328 - 24263264
Alignment:
Q  285 tatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||| ||||| ||| ||| |||||||||||||| ||||| ||||| |||||||||| |||||||    
T  24263328 tatttggataaacagtttaattaagtgcttatagcataaacgtttagcatataagtgtttatgta 24263264  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 20982304 - 20982254
Alignment:
Q  305 ttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    |||||||||||||| |||| || |||||||||||||||||||||| |||||    
T  20982304 ttaagtgcttatagcataagtgcttatcatataagtgcttatgtataagct 20982254  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 3951526 - 3951562
Alignment:
Q  313 ttataggataaatgtttatcatataagtgcttatgta 349  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  3951526 ttatagcataaatgcttatcatataagtgcttatgta 3951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 14716647 - 14716595
Alignment:
Q  297 cagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||||| |||||||||||||| ||||   ||| |||||||||||||||||||    
T  14716647 cagcttaattaagtgcttatagcataaggatttgtcatataagtgcttatgta 14716595  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 26516185 - 26516249
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| || |||| ||||| |||||||| ||||  | |||||||||||||||||||||| |||||    
T  26516185 gataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagct 26516249  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 32386725 - 32386688
Alignment:
Q  312 cttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  32386725 cttatagtataaatgtttatcatataagtgcttatgta 32386688  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 18264232 - 18264276
Alignment:
Q  305 ttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  18264232 ttaagtgcgtatagtataaacgtttatcatataagtgcttatgta 18264276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 32386261 - 32386218
Alignment:
Q  312 cttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||    
T  32386261 cttatagtataaaagtttatcatataagtgcttatgtataagct 32386218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 3217359 - 3217309
Alignment:
Q  305 ttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    |||||||||||||| ||||  | |||||||||||||||||||||| |||||    
T  3217359 ttaagtgcttatagtataagcgattatcatataagtgcttatgtataagct 3217309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 4003783 - 4003719
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| || |||| |||||||||||||| |||| | |||||  |||||||||||||||| |||||    
T  4003783 gataaacaacttaattaagtgcttatagcataagtttttatgctataagtgcttatgtataagct 4003719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 7342091 - 7342140
Alignment:
Q  305 ttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagc 354  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||| ||||    
T  7342091 ttaagtgcttatagtataaatgcttatcagataagtgcttatgtataagc 7342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 18512602 - 18512548
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgctta 345  Q
    |||||||| |||| |||||||||||||| |||||  ||||||||||||| |||||    
T  18512602 gataagcaacttaattaagtgcttatagcataaacatttatcatataagagctta 18512548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 33640995 - 33641053
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||| ||||||| |||||||||||||| ||||  | ||||||||||||||||| ||||    
T  33640995 gataaacagcttaattaagtgcttatagaataatcgcttatcatataagtgcttttgta 33641053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 6360888 - 6360832
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatg 347  Q
    ||||| |||||||  ||||||||| ||| ||||| ||||||||||||||||| ||||    
T  6360888 gataaccagcttaaataagtgcttgtagcataaacgtttatcatataagtgcctatg 6360832  T

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Target: scaffold0590 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 1257 - 1193
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| || |||| |||||| ||||||| ||||| || ||||||||||||||||||||| |||||    
T  1257 gataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagct 1193  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 2718 - 2782
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| || |||| |||||| ||||||| ||||| || ||||||||||||||||||||| |||||    
T  2718 gataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagct 2782  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 5630110 - 5630042
Alignment:
Q  279 aggctctatttagataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatg 347  Q
    ||||||| ||| ||||| || |||| |||||| ||||||| |||| |||||||||||||||| ||||||    
T  5630110 aggctctgtttggataaacaacttaattaagtccttatagaataagtgtttatcatataagtacttatg 5630042  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 27481477 - 27481413
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagct 355  Q
    ||||| || |||| ||| |||||||||| |||||||||||| ||||||||| ||||||| |||||    
T  27481477 gataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataagct 27481413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 47003983 - 47004029
Alignment:
Q  300 cttagttaagtgcttataggataaatgtttatcatataagtgcttat 346  Q
    |||| |||||||||||||| | |||||||||||||||||||| ||||    
T  47003983 cttaattaagtgcttatagcaaaaatgtttatcatataagtgtttat 47004029  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 23785149 - 23785187
Alignment:
Q  300 cttagttaagtgcttataggataaatgtttatcatataa 338  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  23785149 cttaattaagtgcttatagcataaatgtttatcatataa 23785187  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 1288971 - 1288922
Alignment:
Q  300 cttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    ||||||| |||||||||||  |||  ||||||||||||||||||||||||    
T  1288971 cttagttcagtgcttatagcgtaagcgtttatcatataagtgcttatgta 1288922  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 52324051 - 52324002
Alignment:
Q  300 cttagttaagtgcttataggataaatgtttatcatataagtgcttatgta 349  Q
    |||| |||||||||||||| |||| |||||| ||||||||| ||||||||    
T  52324051 cttaattaagtgcttatagcataagtgtttagcatataagtacttatgta 52324002  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 32417310 - 32417255
Alignment:
Q  291 gataagcagcttagttaagtgcttataggataaatgtttatcatataagtgcttatg 347  Q
    |||||||||| ||| ||||||||||||| ||||||| |||| ||||||||| |||||    
T  32417310 gataagcagcataggtaagtgcttatagtataaatgcttat-atataagtgtttatg 32417255  T

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