View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1703_low_6 (Length: 353)
Name: NF1703_low_6
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_6 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 33649152 - 33649270
Alignment:
| Q |
235 |
ctctgtttcaaaatcacattaatcaacactcatcaatgttcaaactttaaaattcagaatccaaaaataattgaaaactcaaattattttttaaagaatc |
334 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33649152 |
ctctgtttcaaaatcacattaattaacactcatcaatgttcaaactttaaaattcagaatccaaaaataattgaaaactcaaattattttttaaagactc |
33649251 |
T |
|
| Q |
335 |
gatcatcatctcttctcct |
353 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33649252 |
gatcatcatctcttctcct |
33649270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 33649027 - 33649082
Alignment:
| Q |
111 |
atttaaaattgctaacggtggcccaaaaacacatgttaattaattaaatagatgaa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33649027 |
atttaaaattgctaacggtggcccaaaaacacatgttaattaattaaatagatgaa |
33649082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 125962 - 126073
Alignment:
| Q |
1 |
ttaatggagctgtccacttgtcaaacaaagccgcagccaattgtcacacatacaggaagccagatgtcatgcctgaaggaagcaggtattctcttcttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
125962 |
ttaatggagctgtccacttgtcaaacaaagccgcagccaattgtcacacatataggaaaccaaatgtcatgcctggaggaagcaggtattctcttcttat |
126061 |
T |
|
| Q |
101 |
attataggagat |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
126062 |
attataggagat |
126073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University