View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1703_low_7 (Length: 334)
Name: NF1703_low_7
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 5717073 - 5717379
Alignment:
| Q |
10 |
aatatttcttagatcatgaattgatttccttcgaagaaaaaattattatgaattgcttggccaaaccaacttcacacaattacgtgagggacagttgtat |
109 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717073 |
aatatttcttagatcatgaattgctttccttcaaagaaaaaaatattatgaattgcttggccaaaccaacttcacacaattacgtgagggacagttgtat |
5717172 |
T |
|
| Q |
110 |
ggtcatactcaatatcacaaat-ataatgtattcatgtgc-nnnnnnngcacttataatttacggtcgggtcgtagtctctaattataaaccctttttaa |
207 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5717173 |
ggtcatactcaatatcacaaataaaaatgtatttatatgcaaataaaagcacttataatttacggtcgggtcgtagtctctaattataaaccctttttga |
5717272 |
T |
|
| Q |
208 |
agaatttacttgtccttaaatataagtcattatgcaatttattacaaccatttannnnnnnaattttcaaatatgtctcgttctaatgttagattaaatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| |||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
5717273 |
agaatttacttgtccttaaatataagttattatacaatttactacaaatattta-ttttttaattttcaaatatgtctcattttaatgttaggttaaatt |
5717371 |
T |
|
| Q |
308 |
acattttt |
315 |
Q |
| |
|
|||||||| |
|
|
| T |
5717372 |
acattttt |
5717379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 5683599 - 5683728
Alignment:
| Q |
15 |
ttcttagatcatgaattgatttccttcgaagaaaaaattattatgaattgcttggccaaaccaacttcacacaattacgtgagggacagttgtatggtca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
5683599 |
ttcttagatcatgaattgatttccttcgaagaaaaaattattatgaattgcttggccaaaccaacttcacataattacgtgagggacagttgtgtggtca |
5683698 |
T |
|
| Q |
115 |
tactcaatatcacaaatataatgtattcat |
144 |
Q |
| |
|
| |||||||||||||||| ||||| ||||| |
|
|
| T |
5683699 |
tcctcaatatcacaaataaaatgtcttcat |
5683728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 5738357 - 5738422
Alignment:
| Q |
183 |
gtctctaattataaaccctttttaaagaatttacttgtccttaaatataagtcattatgcaattta |
248 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5738357 |
gtctctaattataaactctttttgaagaatttacttgtcgttaaatataagtcattatgcaattta |
5738422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University