View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1703_low_9 (Length: 279)
Name: NF1703_low_9
Description: NF1703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1703_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 15069218 - 15068952
Alignment:
| Q |
1 |
ccaaagtatttcacaaatagaatgatccaccaccttcatcttggtttcttgaatgcacgccactaatgactttctttgtagacatttcttgtgtatcgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
15069218 |
ccaaagtatttcacaaatagaatgatccaccaccttcatcttggtttcttgaatgcacgccactaatgactt-ctttgtagacatttcttgtgcatcgag |
15069120 |
T |
|
| Q |
101 |
aaatcaagggtaaatcatgcattataatttggtggtttgtttttctatggtaagattttttatgctcggttacttgtcatacaattatcagctatttgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15069119 |
aaatcaagggtaaatcatgcattataatttggtggtttgtttttctatggtaagattttgtatgctcggttacttgtcatacaattatcagctatttgag |
15069020 |
T |
|
| Q |
201 |
aattgaagaatgatgtcacatttgacaatcatatacaaatatgactcatattaacaagtgtgtttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15069019 |
aattgaagaatgatgtcacatttgaaaatcatatacaaatatgactcatattaacaagtgtgtctcat |
15068952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University