View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704-Insertion-3 (Length: 982)
Name: NF1704-Insertion-3
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 701; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 8 - 982
Target Start/End: Complemental strand, 52348117 - 52347150
Alignment:
| Q |
8 |
ccaccaccacttcatcattggaaatattattgcttctttttaaacaactcacaaataatgcatgacaatgattaatcctgctaaaattagaaatggataa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52348117 |
ccaccaccacttcatcattggaaatattattgcttctttttaaacaactcacaaataatgcatgacaatgattaatcctgctaaaattagaaatggataa |
52348018 |
T |
|
| Q |
108 |
atcttgctaaagttgaaatcgcaataaaaataagaatttctaacattttatgcttgatgttcttttacgacctttcttgatcccactcttcattcttctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
52348017 |
atcttgctaaagttgaaatcgcaataaaaataagaatttcta----------------------ttacggccttttttgatcccactcttcattcttctt |
52347940 |
T |
|
| Q |
208 |
cgaacctattttattttttgcacgagtgcctctgtgcactttttatggatcttaaaaaggtaaattttttataaaaatttgggtattcattgtattgaac |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52347939 |
agaacctattttattttttgcacgagtgcctctgtgcactttttatggatcttaaaaaggtaaatcttttataaaaatttgggtattcattgtattgaac |
52347840 |
T |
|
| Q |
308 |
tatttgacnnnnnnnnnnaaaaagtattttcttaatttaaaatgtttaataagtgtcccagaagcactcattaattcatgatttctcatttaaaatgtcc |
407 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52347839 |
tatttgacttttttttttaaa--gtattttcttaatttaaaatgtttaataagtgttccagaagcactcattaattcatgatttctcatgtaaaatgtcc |
52347742 |
T |
|
| Q |
408 |
tgatcaacattttctttttcaatttcaaatattgattaatagttgcacattgtttcaaggccttcttcgacaaattcaatagcatttttacgatgtttgc |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
52347741 |
tgatcaacattttctttttcaatttcaaatattgattaatagttgcacattgtttcaaggccttcctcgagaaattcaatagcatttttacgatgtttgc |
52347642 |
T |
|
| Q |
508 |
ttctaatgtcattggcctatcatcttggtatatagacagagaagacagggatttggattctctccatttaaaatcctctcaagtggaatctcaatcaccc |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52347641 |
ttctaatgtcattggcctatcatcttggtatatggacaaagaagacagggatttggattctctccatttaaaatcctctcaagtggaatctcaatcaccc |
52347542 |
T |
|
| Q |
608 |
aacatgatagagaaaatgagaattaaattatcgc------------ccgagtatattaatgtagagaatccaaatcgcaagcaaaatacccaaaatttta |
695 |
Q |
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||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52347541 |
aacatgagagagaaaatgagaattaaattaccgccttgccatttagccgagtatattaatgtagagaatccaaatcgcaagcaaaataccaaaaatttta |
52347442 |
T |
|
| Q |
696 |
agtgtcattaatgtatttctatgaatatactcattaaactcaaacaagtgacacaagcaagaaattgccnnnnnnnncttctcttccattgttaaacttc |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52347441 |
agtgtcattaatgtatttctatgaatatactcattaaactcaaacaagtgacacaagcaagaaattgcctgttttttcttctcttccattgttaaacttc |
52347342 |
T |
|
| Q |
796 |
gtagagatgcacgtctcttccattgttaatagagatgtaagcgtccaaagagttggcaatgggatacctaagaggatttagatgatataacatacgtctc |
895 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52347341 |
gtagagatgcacttctcttccattgttaatagagatgtaagcttccaaagagttggcaatgggatacctaagaggatttagatgatataacatacgtctc |
52347242 |
T |
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| Q |
896 |
ttctaactt-acatctgacaattttttatggcattaacaa-tttttggtattttagac-actttactt-gaac--aaagttgtgctctagttt |
982 |
Q |
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||||||||| | ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
52347241 |
ttctaacttaatatctg-caattttttatggcattaacaattttttggtattttagacaactttacttggaacaaaaagttgtgctctagttt |
52347150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 638
Target Start/End: Original strand, 5472598 - 5472652
Alignment:
| Q |
584 |
tctcaagtggaatctcaatcacccaacatgatagagaaaatgagaattaaattat |
638 |
Q |
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||||||||| ||||||||||| | ||||||| ||||||| ||||||||||||||| |
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|
| T |
5472598 |
tctcaagtgaaatctcaatcatcaaacatgagagagaaagtgagaattaaattat |
5472652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 559 - 638
Target Start/End: Original strand, 34643969 - 34644048
Alignment:
| Q |
559 |
tttggattctctccatttaaaatcctctcaagtggaatctcaatcacccaacatgatagagaaaatgagaattaaattat |
638 |
Q |
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||||||||||||||||| | ||| ||||||||| |||||||| | | ||||||| ||||||||| ||||||||||||| |
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| T |
34643969 |
tttggattctctccattaataattttctcaagtgaaatctcaactatcaaacatgaaagagaaaataagaattaaattat |
34644048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 588 - 634
Target Start/End: Original strand, 18341606 - 18341652
Alignment:
| Q |
588 |
aagtggaatctcaatcacccaacatgatagagaaaatgagaattaaa |
634 |
Q |
| |
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||||||| ||||||||| | ||||||| ||||||||||||||||||| |
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| T |
18341606 |
aagtggattctcaatcatcaaacatgagagagaaaatgagaattaaa |
18341652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 638
Target Start/End: Complemental strand, 37526527 - 37526473
Alignment:
| Q |
584 |
tctcaagtggaatctcaatcacccaacatgatagagaaaatgagaattaaattat |
638 |
Q |
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|||||||||||||||||| || | ||||| | ||||||||||||||||||||||| |
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| T |
37526527 |
tctcaagtggaatctcaaccatcaaacataagagagaaaatgagaattaaattat |
37526473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 584 - 638
Target Start/End: Complemental strand, 6743 - 6689
Alignment:
| Q |
584 |
tctcaagtggaatctcaatcacccaacatgatagagaaaatgagaattaaattat |
638 |
Q |
| |
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|||||||||||||| ||| || | ||||| | ||||||||||||||||||||||| |
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| T |
6743 |
tctcaagtggaatcccaaccatcaaacataagagagaaaatgagaattaaattat |
6689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 584 - 638
Target Start/End: Original strand, 14913594 - 14913648
Alignment:
| Q |
584 |
tctcaagtggaatctcaatcacccaacatgatagagaaaatgagaattaaattat |
638 |
Q |
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||||||||| |||||||| || | ||||||| ||||||| ||||||||||||||| |
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| T |
14913594 |
tctcaagtgaaatctcaaccatcaaacatgagagagaaagtgagaattaaattat |
14913648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 584 - 638
Target Start/End: Original strand, 28234662 - 28234716
Alignment:
| Q |
584 |
tctcaagtggaatctcaatcacccaacatgatagagaaaatgagaattaaattat |
638 |
Q |
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||||| |||||||||||| || | | ||||| ||||||||||||||||||||||| |
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| T |
28234662 |
tctcatgtggaatctcaaccatcaatcatgagagagaaaatgagaattaaattat |
28234716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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