View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1704-Insertion-4 (Length: 364)
Name: NF1704-Insertion-4
Description: NF1704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1704-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 509349 - 509637
Alignment:
| Q |
8 |
ggaactagagctttcttgtggaaattattagggaaatcgttaaagatttgtctatcgaggagttgagattgaaatggagagaaattaggacattgttctt |
107 |
Q |
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| T |
509349 |
ggaactagagctttcttgtggaaattattagggaaattgttaaagatttgtctatcgaggggttgagattgaaatggagagaaattagggcattgttctt |
509448 |
T |
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| Q |
108 |
ggtcactttcgtaactttcttgagagaaagggaaaatgtataaattnnnnnnnttagggttttatcttgttgagctcttgaagctaatgtattatagctc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
509449 |
ggtcactttcgtaactttcttgagagaaagggaaaatgtataaatt----aaattagggttttatcttgttgagctcttgaagctaatgtattatagctc |
509544 |
T |
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| Q |
208 |
ttttgtatctcttataaagatgtgttgatagtgatcaaatagttgttaactctcccaaacgtagattagtttggactgaactcggtaaaaaca |
300 |
Q |
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| T |
509545 |
ttttgtatctctaataaagatgtgttgataatgatcaaatagttgttaactctcccaaacgtagattagtttgggctgaactcggtaaaaaca |
509637 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 18470915 - 18470959
Alignment:
| Q |
177 |
ttgagctcttgaagctaatgtattatagctcttttgtatctctta |
221 |
Q |
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||||||| ||||||||||| | || |||||||||||||||||||| |
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| T |
18470915 |
ttgagctattgaagctaattttttgtagctcttttgtatctctta |
18470959 |
T |
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