View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17040_low_1 (Length: 254)

Name: NF17040_low_1
Description: NF17040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17040_low_1
NF17040_low_1
[»] scaffold0154 (2 HSPs)
scaffold0154 (23-150)||(9609-9736)
scaffold0154 (142-216)||(9920-9989)


Alignment Details
Target: scaffold0154 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 9609 - 9736
Alignment:
Q  23 tggcatatgctatatatcatatatcgacccaagaagatggcccacaactacattattgtaaatagagaaacacataaaatacttcttgcaagtcctttag 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9609 tggcatatgctatatatcatatatcgacccaagaagatggcccacaactacattattgtaaatagagaaacacataaaatacttcttgcaagtccttcag 9708  T
Q  123 ttttgtgatttgatccgattaaaattat 150  Q
    |||| |  ||| |||| |||||||||||    
T  9709 ttttatcgtttaatcctattaaaattat 9736  T

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Target: scaffold0154; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 9920 - 9989
Alignment:
Q  142 taaaattatataatctgaatctcacaaaaaacctatctacacacactttccctaccaccgttgcagaaatttaac 216  Q
    |||||||||||||||||||||| |  ||||||||||||||||||   |||||||||||| |||||||||||||||    
T  9920 taaaattatataatctgaatctaa--aaaaacctatctacacac---ttccctaccaccattgcagaaatttaac 9989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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