View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17040_low_3 (Length: 203)

Name: NF17040_low_3
Description: NF17040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17040_low_3
NF17040_low_3
[»] chr7 (1 HSPs)
chr7 (54-190)||(43353997-43354130)
[»] chr4 (1 HSPs)
chr4 (54-177)||(1034711-1034831)
[»] chr1 (1 HSPs)
chr1 (54-164)||(30961471-30961578)
[»] chr6 (1 HSPs)
chr6 (54-165)||(747870-747978)
[»] chr2 (1 HSPs)
chr2 (72-172)||(6309972-6310069)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 43353997 - 43354130
Alignment:
Q  54 caaccgccgtatcctgttgtctcatcctcggatctgaccaccaccaccgccgccgtcgggtatctaaaactcatcaccggaacacatgctacgccgacgg 153  Q
    |||||||||| |||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43353997 caaccgccgtctcctattgtctcatcctcggatctgacca---ccaccgccgccgtcgggtatctaaaactcatcaccggaacacatgctacgccgacgg 43354093  T
Q  154 tcgtgaacacaggcggcgttgacgtcgacggtcatga 190  Q
    |||||||||||||||||||||||||||||||||||||    
T  43354094 tcgtgaacacaggcggcgttgacgtcgacggtcatga 43354130  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 1034711 - 1034831
Alignment:
Q  54 caaccgccgtatcctgttgtctcatcctcggatctgaccaccaccaccgccgccgtcgggtatctaaaactcatcaccggaacacatgctacgccgacgg 153  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||| ||   |||||||||| ||||||||||||||||||||||||||||| ||||    
T  1034711 caaccgtcgtctcctgttgtctcatcctcggatctgaccaccaccaccgtcg---tcgggtatcttaaactcatcaccggaacacatgctacgccaacgg 1034807  T
Q  154 tcgtgaacacaggcggcgttgacg 177  Q
    ||||||||||| ||| ||| ||||    
T  1034808 tcgtgaacacaagcgacgtcgacg 1034831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 30961471 - 30961578
Alignment:
Q  54 caaccgccgtatcctgttgtctcatcctcggatctgaccaccaccaccgccgccgtcgggtatctaaaactcatcaccggaacacatgctacgccgacgg 153  Q
    |||||| |||||||| | |||||||||||||||||||||| |||||||| ||   | |||||| | ||||||| ||||||||||||||| ||||||||||    
T  30961471 caaccgtcgtatcctttcgtctcatcctcggatctgaccatcaccaccgtcg---ttgggtatatcaaactcaccaccggaacacatgcaacgccgacgg 30961567  T
Q  154 tcgtgaacaca 164  Q
    || ||||||||    
T  30961568 tcatgaacaca 30961578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 747978 - 747870
Alignment:
Q  54 caaccgccgtatcctgttgtctcatcctcggatctgaccaccaccaccgccgccgtcgggtatctaaaactcatcaccggaacacatgctacgccgacgg 153  Q
    |||||| |||||||||| |||||| ||||||||||||||| |||||||| ||   | |||||| | ||||||| |||| |||||||||| ||||||||||    
T  747978 caaccgtcgtatcctgtcgtctcaccctcggatctgaccatcaccaccgtcg---ttgggtatatcaaactcaccaccagaacacatgcaacgccgacgg 747882  T
Q  154 tcgtgaacacag 165  Q
    || |||||||||    
T  747881 tcatgaacacag 747870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 6310069 - 6309972
Alignment:
Q  72 gtctcatcctcggatctgaccaccaccaccgccgccgtcgggtatctaaaactcatcaccggaacacatgctacgccgacggtcgtgaacacaggcggcg 171  Q
    |||||||||||||||||||||| |||||   ||| |||||||||||| |||| || ||||| ||||||||| ||  |||||| | ||||| ||||| |||    
T  6310069 gtctcatcctcggatctgaccatcacca---ccgtcgtcgggtatctcaaacacaccaccgaaacacatgcgacaacgacggccatgaacgcaggcagcg 6309973  T

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