View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17041_high_1 (Length: 638)
Name: NF17041_high_1
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_high_1 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 63 - 638
Target Start/End: Original strand, 39802556 - 39803131
Alignment:
| Q |
63 |
gaaggggggcagtgtgtgttggtgtggtagaaagatattatgggtgtcagaagatgtgtcgaggtagaagttgataccttgtttaatgataacttagtaa |
162 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39802556 |
gaaggggggcagtgtgtgtcggtgtggtagaaagatattatgggtgtcagaagatgtgtcgaggtagaagttgataccttgtttaatgataacttagtaa |
39802655 |
T |
|
| Q |
163 |
gagcggtggacgaagaacctaataatttattttgattagatcattgactgaaatgagcacctttatgtttaaaatttaggaggttgtttgaattagctaa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39802656 |
gagcggtggacgaagaacctaataatttattttgattagatcattgactgaaatgagcacctttatgtttaaaatttaggtggttgtttgaattagctaa |
39802755 |
T |
|
| Q |
263 |
taatcattttgtgtcagttgagaagatgtgtgatttatggtaggcgtcaaaggtgatgggtgaaggtggcgtatgagactccatgcttggaaggaggaga |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39802756 |
taatcattttgtgtcagttgagaagatgtgtgatttatggtaggcgtcaaaggtgatgggtgaaggtggcgtatgagactccatgcttggaaggaggaga |
39802855 |
T |
|
| Q |
363 |
agttggatgagtgttgtttgttgttgtataatatatttttgcaggaaaactaaagagatgtttgagattggcaactagatcttgatggaggtgccctact |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39802856 |
agttggatgagtgttgtttgttgttgtataatatatttttgcaggaaaactaaagagatgtttgagattggcaactagatcttgatggaggtgccctact |
39802955 |
T |
|
| Q |
463 |
cttaaggaaataacgtgaaacaagagagctctgttgaaaatgtcggtgtttgcttgacgattttttcacaatagaattccaattaaggataacttgttac |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39802956 |
cttaaggaaataacgtgaaacaagagagctctgttgaaaatgtcggtgtttgcttgacgattttttcacaatagaattccaattaaggataacttgttac |
39803055 |
T |
|
| Q |
563 |
gtcctggaatcttacatgatggttctcatctatgcattggaggtcatgtagcagaagaatatgttgatcatttgtt |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39803056 |
gtcctggaatcttacatgatggttctcatctatgcattggaggtcatgtggcagaagaatatgttgatcatttgtt |
39803131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 92 - 638
Target Start/End: Original strand, 39810560 - 39811089
Alignment:
| Q |
92 |
gaaagatattatgggtgtcagaagatgtgtcgaggtagaagttgataccttgtttaatgataacttagtaagagcggtggacgaagaacctaataattta |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| || || ||||||||||| |
|
|
| T |
39810560 |
gaaagatattatgggtgtcagaagatgtgtcgaggtagaagttgataacttgtt---------------aagggcggtggac-aataagctaataattta |
39810643 |
T |
|
| Q |
192 |
ttttgattagatcattgactgaaatgagcacctttatgtttaaaatttaggaggttgtttgaattagctaataatcattttgtgtcagttgagaagatgt |
291 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
39810644 |
ttttgattagaccattgactgaaatgaggacctttatgtttaagatttaggagcttgtttgaaatagctaataatagcttagtgtcagttgagaagatgt |
39810743 |
T |
|
| Q |
292 |
gtgatttatggtaggcgtcaaaggtgatgggtgaaggtggcgtatgagactccatgcttggaaggaggagaagttggatgagtgttgtttgttgttgtat |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
39810744 |
gtgatttatggtaggcgtcaaaggtgatgggtaaaggtgtcgtatgagactccatgcttgggaggaggagaagtaagatgagtgttgtttgttgtagtat |
39810843 |
T |
|
| Q |
392 |
aatatatttttgcaggaaaactaaagagatgtttgagattggcaactagatcttgatggaggtgccctactcttaaggaaataacgtgaaacaagagagc |
491 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
39810844 |
aatatatttttgcaggaaaactgaagagatgtttgagattggcaactagatcctgatggaggtgccctactcttacagaaatcacgtgaaacaagagagc |
39810943 |
T |
|
| Q |
492 |
tctgttgaaaatgtcggtgtttgcttgacgattttttcacaatagaattccaattaaggataacttgttacgtcctggaatcttacatgatggttctcat |
591 |
Q |
| |
|
|| ||||||||||||||| ||||| ||| |||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||| | |
|
|
| T |
39810944 |
tccgttgaaaatgtcggt-tttgcgtgaatttttttttacaatagaattccaactaaggataacttgttatgtcatggaatcttacatgatgattctcgt |
39811042 |
T |
|
| Q |
592 |
ctatgcattggaggtcatgtagcagaagaatatgttgatcatttgtt |
638 |
Q |
| |
|
||||||| ||||||| ||| | ||| ||||||||||||| |||||| |
|
|
| T |
39811043 |
ctatgcagtggaggttatggggtagatgaatatgttgatcgtttgtt |
39811089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39802439 - 39802482
Alignment:
| Q |
1 |
tttatttattaggataatgatgttggatatgcatgtagattagg |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39802439 |
tttatttattaggataatgatgttggatatgcatgtagattagg |
39802482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 41348180 - 41348236
Alignment:
| Q |
342 |
tccatgcttggaaggaggagaagttggatgagtgttgtttgttgttgtataatatat |
398 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||| ||||||||||| ||||| |
|
|
| T |
41348180 |
tccatgattggaaggaggagaagttggaggaatgttgttagttgttgtatactatat |
41348236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 402
Target Start/End: Original strand, 29561954 - 29562044
Alignment:
| Q |
312 |
aaggtgatgggtgaaggtggcgtatgagactccatgcttggaaggaggagaagttggatgagtgttgtttgttgttgtataatatattttt |
402 |
Q |
| |
|
|||||| |||||| | |||||||| ||| || ||||||||| | ||||||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
29561954 |
aaggtgttgggtgcacgtggcgtaggaggcttcatgcttgggatgaggagaagttgggaaagtgttgttctttgttgtataatattttttt |
29562044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 45720235 - 45720276
Alignment:
| Q |
348 |
cttggaaggaggagaagttggatgagtgttgtttgttgttgt |
389 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| |||||||| |
|
|
| T |
45720235 |
cttgggaggaggagaagttgaatgagtgttgttcgttgttgt |
45720276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University