View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17041_high_10 (Length: 398)
Name: NF17041_high_10
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 30767317 - 30767687
Alignment:
| Q |
19 |
aagaatgtgtccaatgtccattaatcttgatagagaatgatccatccat-taataagatgcatgaaagaaatttaaaaaggaacaaggagtgggagaata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30767317 |
aagaatgtgtccaatgtccattaatcttgatagagaatgatccatccatataataagatgcatgaaagaaatttaaaaaggaacaaggagtgggagaata |
30767416 |
T |
|
| Q |
118 |
---attttgctgagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaatattatcagtggaataatacctgataga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30767417 |
ataattttgctgagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaatattatcagtggaataatacctgataga |
30767516 |
T |
|
| Q |
215 |
aaactttgctcagttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccaccttgaactgtatcaggaatgcagaaacct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30767517 |
aaactttgctcagttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccaccttgaactgtatcaggaatgcagaaacct |
30767616 |
T |
|
| Q |
315 |
gctaatccatcagaaacaaacctgcttccaaagattgaagcttgatgaacttgttgagacctgtgatgatg |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30767617 |
gctaatccatcagaaacaaacctgcttccaaagattgaagcttgatgaacttgttgagacctgtgatgatg |
30767687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University