View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17041_high_12 (Length: 368)

Name: NF17041_high_12
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17041_high_12
NF17041_high_12
[»] chr5 (5 HSPs)
chr5 (18-172)||(42723341-42723495)
chr5 (277-335)||(42723280-42723338)
chr5 (101-135)||(18695321-18695355)
chr5 (101-131)||(24463269-24463299)
chr5 (101-137)||(16143393-16143429)
[»] chr4 (4 HSPs)
chr4 (101-135)||(34995323-34995357)
chr4 (101-135)||(47998597-47998631)
chr4 (101-137)||(28676173-28676209)
chr4 (101-137)||(32365688-32365724)
[»] chr1 (4 HSPs)
chr1 (106-137)||(4637944-4637975)
chr1 (101-135)||(21433435-21433469)
chr1 (101-137)||(40596075-40596111)
chr1 (101-137)||(41507215-41507251)
[»] scaffold0184 (1 HSPs)
scaffold0184 (101-135)||(16628-16662)
[»] scaffold0078 (1 HSPs)
scaffold0078 (101-135)||(56182-56216)
[»] scaffold0049 (1 HSPs)
scaffold0049 (101-135)||(72203-72237)
[»] chr8 (3 HSPs)
chr8 (101-135)||(10644836-10644870)
chr8 (101-135)||(35937546-35937580)
chr8 (101-137)||(1370306-1370342)
[»] chr6 (4 HSPs)
chr6 (101-135)||(1376367-1376401)
chr6 (101-135)||(1384115-1384149)
chr6 (101-135)||(25127867-25127901)
chr6 (99-135)||(3552188-3552224)
[»] chr3 (4 HSPs)
chr3 (101-135)||(29573390-29573424)
chr3 (106-135)||(27162503-27162532)
chr3 (99-135)||(32187142-32187178)
chr3 (101-137)||(47683804-47683840)
[»] chr2 (4 HSPs)
chr2 (101-135)||(5031926-5031960)
chr2 (101-137)||(305004-305040)
chr2 (101-137)||(7121393-7121429)
chr2 (101-137)||(29795450-29795486)
[»] scaffold0592 (1 HSPs)
scaffold0592 (101-134)||(8342-8375)
[»] chr7 (2 HSPs)
chr7 (106-135)||(1471325-1471354)
chr7 (87-131)||(25940670-25940715)
[»] scaffold0283 (1 HSPs)
scaffold0283 (18-50)||(17437-17469)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 42723495 - 42723341
Alignment:
Q  18 gttagaaatgagatgtaaggttgtatcgtgatgattatatctatatgtggtattcgatcaatgagcgtgatattttgttgagaaaattatatttgtacaa 117  Q
    |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42723495 gttagaaatgagatgtaaggttgtatcgagatgattatgtgtatatgtggtattcgatcaatgaacgtgatattttgttgagaaaattatatttgtacaa 42723396  T
Q  118 ccattttgtaacaactttcttaatctaagccgatatgtttggtccacaacatcaa 172  Q
    ||||||||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  42723395 ccattttgtaataacttttttaatctaagccgatatgttcggtccacaacatcaa 42723341  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 42723338 - 42723280
Alignment:
Q  277 ctactattgtggatttgaattatcttattttcttgcaccattaggagagtttgacacaa 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723338 ctactattgtggatttgaattatcttattttcttgcaccattaggagagtttgacacaa 42723280  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 18695321 - 18695355
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  18695321 aaatgatatttgtacaaccattttgtaacaacttt 18695355  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 24463299 - 24463269
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaa 131  Q
    |||||||||||||||||||||||||||||||    
T  24463299 aaattatatttgtacaaccattttgtaacaa 24463269  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 16143393 - 16143429
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  16143393 aaatgatatttgtacaaccattttgtgacaactttct 16143429  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 34995323 - 34995357
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||||||||||||||||||||||||||||||||||    
T  34995323 aaattatatttgtacaaccattttgtaacaacttt 34995357  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 47998597 - 47998631
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  47998597 aaatgatatttgtacaaccattttgtaacaacttt 47998631  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 28676209 - 28676173
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  28676209 aaatgatatttgtacaaccattttgtgacaactttct 28676173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 32365724 - 32365688
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  32365724 aaatgatatttgtacaaccattttgtgacaactttct 32365688  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 4637944 - 4637975
Alignment:
Q  106 atatttgtacaaccattttgtaacaactttct 137  Q
    ||||||||||||||||||||||||||||||||    
T  4637944 atatttgtacaaccattttgtaacaactttct 4637975  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 21433469 - 21433435
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  21433469 aaatgatatttgtacaaccattttgtaacaacttt 21433435  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 40596111 - 40596075
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  40596111 aaatgatatttgtacaaccattttgtgacaactttct 40596075  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 41507251 - 41507215
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  41507251 aaatgatatttgtacaaccattttgtgacaactttct 41507215  T

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Target: scaffold0184 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 16662 - 16628
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  16662 aaatgatatttgtacaaccattttgtaacaacttt 16628  T

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Target: scaffold0078 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 56182 - 56216
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  56182 aaatgatatttgtacaaccattttgtaacaacttt 56216  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 72237 - 72203
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  72237 aaatgatatttgtacaaccattttgtaacaacttt 72203  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 10644870 - 10644836
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  10644870 aaatgatatttgtacaaccattttgtaacaacttt 10644836  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 35937580 - 35937546
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  35937580 aaatgatatttgtacaaccattttgtaacaacttt 35937546  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 1370342 - 1370306
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  1370342 aaatgatatttgtacaaccactttgtaacaactttct 1370306  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 1376367 - 1376401
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||||||||||||||||||||||| ||||||||||    
T  1376367 aaattatatttgtacaaccattttctaacaacttt 1376401  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 1384115 - 1384149
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||||||||||||||||||||||| ||||||||||    
T  1384115 aaattatatttgtacaaccattttctaacaacttt 1384149  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 25127901 - 25127867
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  25127901 aaatgatatttgtacaaccattttgtaacaacttt 25127867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 3552224 - 3552188
Alignment:
Q  99 gaaaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  3552224 gaaaatgatatttgtacaaccattttttaacaacttt 3552188  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 29573424 - 29573390
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  29573424 aaatgatatttgtacaaccattttgtaacaacttt 29573390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 27162532 - 27162503
Alignment:
Q  106 atatttgtacaaccattttgtaacaacttt 135  Q
    ||||||||||||||||||||||||||||||    
T  27162532 atatttgtacaaccattttgtaacaacttt 27162503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 32187142 - 32187178
Alignment:
Q  99 gaaaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  32187142 gaaaatgatatttgtacaaccattttgtgacaacttt 32187178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 47683804 - 47683840
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  47683804 aaatgatatttgtacaaccattttgtgacaactttct 47683840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 5031926 - 5031960
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaacttt 135  Q
    |||| ||||||||||||||||||||||||||||||    
T  5031926 aaatgatatttgtacaaccattttgtaacaacttt 5031960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 305040 - 305004
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||||||||||||||||||||||||  ||||||||||    
T  305040 aaattatatttgtacaaccattttggtacaactttct 305004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 7121393 - 7121429
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  7121393 aaatgatatttgtataaccattttgtaacaactttct 7121429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 29795450 - 29795486
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactttct 137  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  29795450 aaatgatatttgtacaaccattttgtgacaactttct 29795486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 8375 - 8342
Alignment:
Q  101 aaattatatttgtacaaccattttgtaacaactt 134  Q
    |||||||||||||||||||||||||| |||||||    
T  8375 aaattatatttgtacaaccattttgtgacaactt 8342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 135
Target Start/End: Complemental strand, 1471354 - 1471325
Alignment:
Q  106 atatttgtacaaccattttgtaacaacttt 135  Q
    ||||||||||||||||||||||||||||||    
T  1471354 atatttgtacaaccattttgtaacaacttt 1471325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 25940715 - 25940670
Alignment:
Q  87 atattttgttgaga-aaattatatttgtacaaccattttgtaacaa 131  Q
    ||||||| |||||| |||| ||||||||||||||||||||||||||    
T  25940715 atattttcttgagagaaatgatatttgtacaaccattttgtaacaa 25940670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 17469 - 17437
Alignment:
Q  18 gttagaaatgagatgtaaggttgtatcgtgatg 50  Q
    |||||||||||||||||||||||||||| ||||    
T  17469 gttagaaatgagatgtaaggttgtatcgagatg 17437  T

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