View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17041_high_14 (Length: 336)
Name: NF17041_high_14
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 23896128 - 23896432
Alignment:
| Q |
14 |
taggcctcactatgacaaacagcctatcaatgtaagcaaatatggactcaaacacttgatcgaaagaggtaggagatggctgcaagcaatcaaataaata |
113 |
Q |
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| T |
23896128 |
taggcctcactatgacaaacagcctatcaatgtaagcaaatatggactcaaacacttgatcgaaagaggtaggagatggctgcaagcaatcaaataaatg |
23896227 |
T |
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| Q |
114 |
gttagagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaaaagattttaccctattctcggggtggaagcaagggtgaat |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23896228 |
gttcaagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaaaagattttaccctattctcggggtggaagcaagggtgaat |
23896327 |
T |
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| Q |
214 |
gacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatacttgtgttgacagggatttgaatgtcatcgataaccacaggt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23896328 |
gacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatacttgtgttgacagggatttgaatgccatcgataaccacaggt |
23896427 |
T |
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| Q |
314 |
tcttc |
318 |
Q |
| |
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||||| |
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| T |
23896428 |
tcttc |
23896432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 23184095 - 23184398
Alignment:
| Q |
14 |
taggcctcactatgacaaacagcctatcaatgtaagcaaatatggactcaaacacttgatcgaaagaggtaggagatggctgcaagcaatcaaataaata |
113 |
Q |
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| T |
23184095 |
taggcctcactatgacaaacagcctatcaatgtaagcaaatatggactcaaacacttgatcgaaagaggtaggagatggctgcaagcaatcaaataaatc |
23184194 |
T |
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| Q |
114 |
gttagagtaagtttttacgtgtccaataatagcaatagtaatgataataatcgaaagaaaaagattttaccctattctcggggtggaagcaagggtgaat |
213 |
Q |
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|| | |||| ||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23184195 |
gtca-agtacgtttttacgtgtctaataatagcaatagtaatcataataatcgaaagagaaatattttaccctattctcggggtggaagcaagggtgaat |
23184293 |
T |
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| Q |
214 |
gacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatacttgtgttgacagggatttgaatgtcatcgataaccacaggt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
23184294 |
gacgccgttcatgtcaaggtaaaggttgtcgtattcattgttgttagggtttttcatacttgtgttgacagggatttgaatgccatcgataaccactggt |
23184393 |
T |
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| Q |
314 |
tcttc |
318 |
Q |
| |
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||||| |
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| T |
23184394 |
tcttc |
23184398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 7862346 - 7862278
Alignment:
| Q |
30 |
aaacagcctatcaatgtaagcaaatatggactcaaacacttgatcgaaagaggtaggagatggctgcaa |
98 |
Q |
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||||||||||||||||||| |||| ||| |||||||||| | || |||||||| || ||||||||||| |
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| T |
7862346 |
aaacagcctatcaatgtaatcaaacatgcactcaaacacctcctcaaaagaggtcggggatggctgcaa |
7862278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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