View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17041_high_24 (Length: 235)
Name: NF17041_high_24
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 8517865 - 8518078
Alignment:
| Q |
8 |
gcaccatttatgaattcatccccataactcctccaattccaatttgtccctttctcattagtttctctcttggtaacctgtcacagtttaataccatact |
107 |
Q |
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| T |
8517865 |
gcaccatttatgaattcatccccataactcctccaattccaatttgtccatttctcattagtttctctcttggtaacctgtcacagtttaataccatact |
8517964 |
T |
|
| Q |
108 |
caactccagtaaatataagctgaaatggtgaaatctattaagcattgatataatcaatggacacactgacaccaataacaatttgagaaaatagaagtaa |
207 |
Q |
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| T |
8517965 |
caactccagtaaatataagctgaaatggtgaaatctattaagcattgatataatcaatggacacactgacaccaataacaatttgagaaaatagaagtaa |
8518064 |
T |
|
| Q |
208 |
ttgaatgtaactaa |
221 |
Q |
| |
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|||||||||||||| |
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| T |
8518065 |
ttgaatgtaactaa |
8518078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 8525725 - 8525844
Alignment:
| Q |
8 |
gcaccatttatgaattcatccccataactcctccaattccaatttgtccctttctcattagtttctctcttggtaacctgtcacagtttaat--accata |
105 |
Q |
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| T |
8525725 |
gcaccatttaagaattcatctccataagtcctccatttccaatttttccattttccatcggtttctctctttgtaacctgccacaattaaataaacaata |
8525824 |
T |
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| Q |
106 |
ctcaactccagtaaatataa |
125 |
Q |
| |
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|||||||| |||| |||||| |
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| T |
8525825 |
ctcaactcaagtatatataa |
8525844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 9483377 - 9483426
Alignment:
| Q |
168 |
acacactgacaccaataacaatttgagaaaatagaagtaattgaatgtaac |
218 |
Q |
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| T |
9483377 |
acacattgacaccaataataatttgagaaaatagaa-taattgaatgtaac |
9483426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 26493578 - 26493528
Alignment:
| Q |
170 |
acactgacaccaataacaatttgagaaaatagaagtaattgaatgtaacta |
220 |
Q |
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|||| ||||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
26493578 |
acacagacactagtaacaatttgagaaaatagaagtgattgaatgtaacta |
26493528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 29236258 - 29236302
Alignment:
| Q |
175 |
gacaccaataacaatttgagaaaatagaagtaattgaatgtaact |
219 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
29236258 |
gacactaataataatttgagaaaatagaagtgattgaatgtaact |
29236302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 10666679 - 10666640
Alignment:
| Q |
175 |
gacaccaataacaatttgagaaaatagaagtaattgaatg |
214 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
10666679 |
gacactaataataatttgagaaaatagaagtaattgaatg |
10666640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 218
Target Start/End: Complemental strand, 55575139 - 55575108
Alignment:
| Q |
187 |
aatttgagaaaatagaagtaattgaatgtaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
55575139 |
aatttgagaaaatagaagtaattgaatgtaac |
55575108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 18542270 - 18542228
Alignment:
| Q |
175 |
gacaccaataacaatttgagaaaatagaagtaattgaatgtaa |
217 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||||||||||| |
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|
| T |
18542270 |
gacaccagtaataatttgagaaaatacaagtaattgaatgtaa |
18542228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 10170444 - 10170401
Alignment:
| Q |
176 |
acaccaataacaatttgagaaaatagaagtaattgaatgtaacta |
220 |
Q |
| |
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|||||||||| |||||||||||||| || |||||||||||||||| |
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|
| T |
10170444 |
acaccaataataatttgagaaaata-aattaattgaatgtaacta |
10170401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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