View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17041_high_3 (Length: 488)
Name: NF17041_high_3
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 177 - 469
Target Start/End: Complemental strand, 39752752 - 39752463
Alignment:
| Q |
177 |
tttatttactcacagtaagggcaacaacagcaacaattagtccaattttggcaacatctacaacatggggacttttaaagtctaactgatttatggaact |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39752752 |
tttatttactcacagtaagggcaacaacagcaacaattagtccaattttggcaacatctacaacatggggactgttaaagtctaactgatttatggaact |
39752653 |
T |
|
| Q |
277 |
tggattgagtccccctttaacatgtttcacaatcttaactccatttttatcggctcgtgttagaaaaacaactagagttgacagtataactgatacaagt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39752652 |
tggattgagtccccctttaacatgtttcacaatcttaactccatttttatcggctcttgttagaaaaacaactagagttgacagtataactgatacaagt |
39752553 |
T |
|
| Q |
377 |
ggtgcaattgatgccaaccagaacaacttcttcttccttttaccctgcaataatgtaataatattaagcatcaatttgagggaaattctgtcc |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39752552 |
ggtgcaattgatgccaaccagaacaacttcttcttccttttaccctgc---aatgtaataatattaagcatcaatttgagggaaattctgtcc |
39752463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 39752918 - 39752808
Alignment:
| Q |
8 |
gacatcatctctttgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagcaacagattcctataacaatggtggaaattagcatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39752918 |
gacatcatctctttgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagcaacagattcctataacaatggtggaaattagcatg |
39752819 |
T |
|
| Q |
108 |
aaaggaacggc |
118 |
Q |
| |
|
||||||||||| |
|
|
| T |
39752818 |
aaaggaacggc |
39752808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 25705947 - 25706011
Alignment:
| Q |
8 |
gacatcatctctttgtttccatcaagttggtatcctttgatcgatgcaaaagatcgtccaacagc |
72 |
Q |
| |
|
|||| ||| ||| |||| ||||||||||||||||||||||| || || |||||||| |||||||| |
|
|
| T |
25705947 |
gacaacatttctctgttcccatcaagttggtatcctttgatggaagcgaaagatcggccaacagc |
25706011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University