View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17041_high_7 (Length: 431)
Name: NF17041_high_7
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 417
Target Start/End: Original strand, 38731189 - 38731597
Alignment:
| Q |
9 |
agcaacaatttttattcactttctttcacttctcatacgcacacaacatcaaaaacaaaacacaacctttctaatatcaatatggcttcttcaaatggaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38731189 |
agcaacaatttttattcactttctttcacttctcacacgcacacaacatcaaaaacaaaacacaacctttctaatatcaatatggcttcttcaaatggaa |
38731288 |
T |
|
| Q |
109 |
ctagctctggaactggttctccttgtggagcatgcaagttccttagaagaaaatgtgcacctgattgcatttttgcaccttacttttgctcagaacaagg |
208 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38731289 |
ctagctctggaaccggttctccttgtggagcatgcaagttccttagaagaaaatgtgcacctgattgcatttttgcaccttacttttgctcagaacaagg |
38731388 |
T |
|
| Q |
209 |
acctgcaagatttgcagctattcataaagtgtttggtgctagcaatgtttctaagttgctcttgcatataccaactcatgaacgttgtgaagctgttgtc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38731389 |
acctgcaagatttgcagctattcataaagtgtttggtgctagcaatgtttctaagttgctcttgcatataccagctcatgaacgttgtgaagctgttgtc |
38731488 |
T |
|
| Q |
309 |
acaattgcttatgaggctcaagctcgtatcagagaccctgtgtatggttgtgtctctcacatttttgccttacaacaacaggtacacatattattcatat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38731489 |
acaattgcttatgaggctcaagctcgtatcagagaccctgtgtatggttgtgtctctcacatttttgccttacaacaacaggtacacatattatttatat |
38731588 |
T |
|
| Q |
409 |
agttaatta |
417 |
Q |
| |
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||||||||| |
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| T |
38731589 |
agttaatta |
38731597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 169 - 393
Target Start/End: Complemental strand, 30927088 - 30926864
Alignment:
| Q |
169 |
ctgattgcatttttgcaccttacttttgctcagaacaaggacctgcaagatttgcagctattcataaagtgtttggtgctagcaatgtttctaagttgct |
268 |
Q |
| |
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|||| ||||| ||||||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
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| T |
30927088 |
ctgagtgcatatttgcaccttatttttgttgtgaagaaggacctgcaagatttgcagctattcataaagtgtttggtgctggcaatgtttccaagatgct |
30926989 |
T |
|
| Q |
269 |
cttgcatataccaactcatgaacgttgtgaagctgttgtcacaattgcttatgaggctcaagctcgtatcagagaccctgtgtatggttgtgtctctcac |
368 |
Q |
| |
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|| || |||| |||||| ||| ||| ||||||||| ||||||||||||| |||||||||||||| | ||| ||||||||||||||||| || || |
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| T |
30926988 |
actgaatttacctgttcatgatcgtcatgatgctgttgtcgcaattgcttatgaagctcaagctcgtattatagatcctgtgtatggttgtgtatcgcat |
30926889 |
T |
|
| Q |
369 |
atttttgccttacaacaacaggtac |
393 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
30926888 |
atttttgctttacaacaacaggtac |
30926864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 31869362 - 31869312
Alignment:
| Q |
218 |
atttgcagctattcataaagtgtttggtgctagcaatgtttctaagttgct |
268 |
Q |
| |
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|||||||||| |||||||||| ||||||||||||||||| ||||| ||||| |
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|
| T |
31869362 |
atttgcagctgttcataaagtctttggtgctagcaatgtctctaaattgct |
31869312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 392
Target Start/End: Original strand, 13286880 - 13287053
Alignment:
| Q |
219 |
tttgcagctattcataaagtgtttggtgctagcaatgtttctaagttgctcttgcatataccaactcatgaacgttgtgaagctgttgtcacaattgctt |
318 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||| |||||||| ||| ||| ||| ||| ||||| ||||| ||| |||||||| || || | |
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| T |
13286880 |
tttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgttactctttgct |
13286979 |
T |
|
| Q |
319 |
atgaggctcaagctcgtatcagagaccctgtgtatggttgtgtctctcacatttttgccttacaacaacaggta |
392 |
Q |
| |
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|||| |||| ||| | ||||||||||| ||||||||||| ||||||| ||||| | |||||||||||| |
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| T |
13286980 |
atgaagctcttgctagggctagagaccctgtttatggttgtgttgctcacatctttgcacttcaacaacaggta |
13287053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 5747522 - 5747484
Alignment:
| Q |
156 |
agaaaatgtgcacctgattgcatttttgcaccttacttt |
194 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||| |
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| T |
5747522 |
agaaaatgtgcacctgattgcattctagcaccttacttt |
5747484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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