View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17041_high_9 (Length: 401)

Name: NF17041_high_9
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17041_high_9
NF17041_high_9
[»] chr3 (5 HSPs)
chr3 (23-389)||(35380703-35381081)
chr3 (270-389)||(35374708-35374827)
chr3 (318-389)||(35351663-35351734)
chr3 (318-389)||(35356797-35356868)
chr3 (24-68)||(35374450-35374494)
[»] chr7 (1 HSPs)
chr7 (319-389)||(10696703-10696773)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 23 - 389
Target Start/End: Original strand, 35380703 - 35381081
Alignment:
Q  23 gaccatagctccaactcagccgcacatggaacagtatcaccatcacgcctcatctccttcattaattatgaatccttttannnnnnnncccatgctcttc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  35380703 gaccatagctccaactcagccgcacatggaacagtatcaccatcacgcctcatctccttcattaattatgaatccttttattttttttcccatgctcttc 35380802  T
Q  123 gtaggggtggttctg------------atgaaaatcctcttcttaagcatcaaatattggtgtacaactcgccatggaacaatggtggaggccaggcgca 210  Q
    |||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35380803 gtaggggtggttctggtgaagatcctgatgaaaatcctcttcttaagcatcaaatattggtgtacaactcgccatggaacaatggtggaggccaggcgca 35380902  T
Q  211 cgcatgtcattcacaacttagacgagtccgttataaacaccgccgtcatcttctcctccgtctacaacgctaaatatgcacaagaagaatttcaacgtga 310  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35380903 cgcacgtcattcacaacttagacgagtccgttataaacaccgccgtcatcctctcctccgtctacaacgctaaatatgcacaagaagaatttcaacgtga 35381002  T
Q  311 ttgtgttatttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccacagtttccatctc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35381003 ttgtgttatttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccagagtttccatctc 35381081  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 389
Target Start/End: Original strand, 35374708 - 35374827
Alignment:
Q  270 gtctacaacgctaaatatgcacaagaagaatttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattggaacgctccctcttt 369  Q
    |||||||  ||||| |||||| | ||||||| || |||||||||||||||||||||| |||| |||||||||||| ||  |||||| || ||||||||||    
T  35374708 gtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggtacactccctcttt 35374807  T
Q  370 gttcccacagtttccatctc 389  Q
    |||||||||| |||||||||    
T  35374808 gttcccacagcttccatctc 35374827  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 35351663 - 35351734
Alignment:
Q  318 atttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccacagtttccatctc 389  Q
    |||||||||  |||||||||| ||||||||  |||| | || ||||||||||||||||||| ||||||||||    
T  35351663 atttgcttggttgaatttgaaaacaatgattacattcgcaccctccctctttgttcccacattttccatctc 35351734  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 35356797 - 35356868
Alignment:
Q  318 atttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccacagtttccatctc 389  Q
    |||||||||  |||||||||| ||||||||  |||| | || ||||||||||||||||||| ||||||||||    
T  35356797 atttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcccacactttccatctc 35356868  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 35374450 - 35374494
Alignment:
Q  24 accatagctccaactcagccgcacatggaacagtatcaccatcac 68  Q
    |||| |||||||||||||||||||||| | || ||||||||||||    
T  35374450 accacagctccaactcagccgcacatgcatcactatcaccatcac 35374494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 10696703 - 10696773
Alignment:
Q  319 tttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccacagtttccatctc 389  Q
    |||| ||| |||||||| |||||||||||  |||| | || || |||||||||||||||| ||||||||||    
T  10696703 tttgtttggatgaatttaaagacaatgatcgcattcgcaccctgcctctttgttcccacactttccatctc 10696773  T

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