View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17041_low_11 (Length: 392)

Name: NF17041_low_11
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17041_low_11
NF17041_low_11
[»] chr1 (3 HSPs)
chr1 (12-170)||(11405964-11406122)
chr1 (225-353)||(11405823-11405952)
chr1 (89-130)||(29643641-29643682)
[»] chr5 (1 HSPs)
chr5 (253-337)||(31559374-31559459)
[»] scaffold1657 (1 HSPs)
scaffold1657 (183-372)||(627-825)
[»] chr4 (1 HSPs)
chr4 (237-328)||(26157010-26157102)
[»] chr2 (2 HSPs)
chr2 (261-375)||(28495263-28495378)
chr2 (183-227)||(38070411-38070455)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 11406122 - 11405964
Alignment:
Q  12 agcagagaaagaagcagggtgctggatcaatggaaaataacggcagacgagaaagatacatttccaggtttaattcttttactatgttgtttatttatgt 111  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  11406122 agcagagaaagaagcagggtgttggttcaatggaaaataatggcagacgagaaagatacattttcgggtttaattcttttactatgttgtttatttatgt 11406023  T
Q  112 caccatgtttagctaatttcattttgattgggtctttcagatgattttaattttgattg 170  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  11406022 caccatgtttagctaatttcattttgatcgggtcttttagatgattttaattttgattg 11405964  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 11405952 - 11405823
Alignment:
Q  225 attgtttgctcttaatgctttttgcatct-gatcacgtataaactgaattcaaatatcaattaactacgagtcttagctattgaattagatctaataatt 323  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11405952 attgtttgctcttaatgatttttgcatcttgatcacgtataaactgaattcaaatatcaattaactacgagccttagctattgaattagatctaataatt 11405853  T
Q  324 atgttaatctaacggattagtctaaggata 353  Q
     |||||||||||||||| ||||||||||||    
T  11405852 gtgttaatctaacggatgagtctaaggata 11405823  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 29643682 - 29643641
Alignment:
Q  89 tttactatgttgtttatttatgtcaccatgtttagctaattt 130  Q
    |||||||||| |||||||||| ||| ||||||||||||||||    
T  29643682 tttactatgtcgtttatttatttcatcatgtttagctaattt 29643641  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 31559459 - 31559374
Alignment:
Q  253 tgatcacgtataaactgaattcaaatatcaattaactacgagtcttagctattgaattagatctaataattat-gttaatctaacg 337  Q
    |||||||||||||||| | |||||||||||||| ||||| ||   ||||||||||||| |||||||||||||| ||||||||||||    
T  31559459 tgatcacgtataaactaatttcaaatatcaattgactactagctctagctattgaattggatctaataattatggttaatctaacg 31559374  T

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Target: scaffold1657 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 372
Target Start/End: Complemental strand, 825 - 627
Alignment:
Q  183 gattgtataaactcttttcacttccattataatcttagttttattg-------tttgctcttaatgctttttgcatct-gatcacgtataaactgaattc 274  Q
    |||||||||||||||||||| | | ||||||||| ||||||||||        |||| ||||| ||| ||||| || | ||||||||||||| ||| |||    
T  825 gattgtataaactcttttcaatgcaattataatcctagttttattcagaattatttgttcttactgccttttgtatattgatcacgtataaaatgatttc 726  T
Q  275 aaatatcaattaactacgagtcttagctattgaattagatctaataattatg-ttaatctaacggattagtctaaggatagatgactgctaggtcatga 372  Q
    |||| |||||| | |||   |  || |||||||||| |||||||||||| || |||||||||||| | |||||| |||||||||| || ||||| ||||    
T  725 aaatgtcaattgattactgatactaactattgaattggatctaataattctggttaatctaacgggtcagtctagggatagatgattgttaggttatga 627  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 26157102 - 26157010
Alignment:
Q  237 taatgctttttgcatct-gatcacgtataaactgaattcaaatatcaattaactacgagtcttagctattgaattagatctaataattatgtt 328  Q
    |||||||||||  |||| |||||| ||| || |||||| ||||||||||| ||||| |||| ||| | ||||||| |||||||||||| ||||    
T  26157102 taatgctttttatatcttgatcacatattaaatgaatttaaatatcaattgactactagtcatagttgttgaattcgatctaataattttgtt 26157010  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 375
Target Start/End: Complemental strand, 28495378 - 28495263
Alignment:
Q  261 tataaactgaattcaaatatcaattaactacgagtcttagctattgaattagatctaataattat-gttaatctaacggattagtctaaggatagatgac 359  Q
    |||||| ||| |||||| ||||||| |||||   | ||| |||||||||| |||| ||||||| | ||||||||||||  | | ||||||||||||||||    
T  28495378 tataaaatgatttcaaacatcaattgactactgatattaactattgaatttgatcaaataattctagttaatctaacgagtcaatctaaggatagatgac 28495279  T
Q  360 tgctaggtcatgatat 375  Q
     | ||||| |||||||    
T  28495278 cgttaggttatgatat 28495263  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 38070411 - 38070455
Alignment:
Q  183 gattgtataaactcttttcacttccattataatcttagttttatt 227  Q
    |||||||||||||||||||| | | ||||||||| ||||||||||    
T  38070411 gattgtataaactcttttcaatgcaattataatcctagttttatt 38070455  T

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