View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17041_low_12 (Length: 373)
Name: NF17041_low_12
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 4705678 - 4706024
Alignment:
| Q |
13 |
tgaactaacctctattttctgctatttgagattgacatcattgtctttcaaaattcagagtttctaatccattacatttaattccaaatcttgcagttgc |
112 |
Q |
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| T |
4705678 |
tgaactaacctctattttctgctatttgagattgacatcattgtctttcgaaattcagagtttctaatccattacatttaattccaaatcttgcagttgc |
4705777 |
T |
|
| Q |
113 |
cagagaaaatcttcaggagcttggacaattcaacaaaaatgttgagatttacaataccttttccaatgcttgcatatcctttctaccttgtaagttgtaa |
212 |
Q |
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| T |
4705778 |
cagagaaaatcttcaggagcttggacaattcaacaaaaatgttgagatttacaataccttttccaatgcttgcatatcctttctaccttgtaagttgtaa |
4705877 |
T |
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| Q |
213 |
tacctaactattttaccagaatttgaacatgatttgctattagttatggtgtatgaattgatctatgaggcactcacaccaaactcgacaccgacatgta |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4705878 |
tacctaactattttaccagaatttgaacatgttttgctattagttatggtgtatgaattgatctatgaggcactcacaccaaactcgacaccgacatgta |
4705977 |
T |
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| Q |
313 |
aacactgaaaatagttttagaaaatagaagtgattacatgcaattac |
359 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4705978 |
aacgctgaaaatagttttagaaaatagaagtgattacatgcaattac |
4706024 |
T |
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