View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17041_low_14 (Length: 351)
Name: NF17041_low_14
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_low_14 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 42652945 - 42652843
Alignment:
| Q |
249 |
gagagagacaccttggaaattgggtggatttagaagtagaagaaggtgtgcatgtgtttagtggggaagagatgaaagttgaaaaagcagcatagatgta |
348 |
Q |
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| T |
42652945 |
gagagagacaccttggaaattgggtggatttagaagtagaagaaggtgtgcatgtgtttagtggggaagagatgaatgttgaaaaagcagcatagatgta |
42652846 |
T |
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| Q |
349 |
agc |
351 |
Q |
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| T |
42652845 |
agc |
42652843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 42653135 - 42652985
Alignment:
| Q |
68 |
cctattgtatcaggtaccaaccatcagcacatagaaaacatgcataatnnnnnnnnnnnnnnn----ttattgaagatgagttccatcatcttaagctaa |
163 |
Q |
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| T |
42653135 |
cctattgtatcaggtaccaaccatcagcacatagaaaacatgcataataaaaacaacaaaaaaaaaattattcaagatgagttccatgatcttaagctaa |
42653036 |
T |
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| Q |
164 |
aaattctatatttttattgattcacaggtatgtcaagtaaagggtaaacag |
214 |
Q |
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| T |
42653035 |
aatttctatatttttattgattcacaagtatgtcaagtaaagggtaaacag |
42652985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 42653182 - 42653150
Alignment:
| Q |
10 |
aagaaaatacaaacagaacaacaaatcaatgct |
42 |
Q |
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| T |
42653182 |
aagaatatacaaacagaacaacaaatcaatgct |
42653150 |
T |
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