View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17041_low_18 (Length: 305)
Name: NF17041_low_18
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 77 - 290
Target Start/End: Complemental strand, 7399032 - 7398819
Alignment:
| Q |
77 |
ggaataatcaagtgattgaaaactaaccacatgatcgcaatccacaagctgttgctcactaagactcgttagcttcccagtcgccaaatagtttgctcct |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7399032 |
ggaataatcaagtgattgaaaactaaccacatgatcgcagtccacaagctgttgctcactaagactcgttagcttcccagtcgccaaatagtttgctcct |
7398933 |
T |
|
| Q |
177 |
tccaaagctccagtagtactaaacgcccaacacgaaccgcaagaaccctaatcacaccaaatcaaaacaaatcattaattaaatcaccataaccatgctt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7398932 |
tccaaagctccagtagtactaaacgcccaacacgaaccgcaagaaccctaatcacaccaaatcaaaacaaatcattaattaaatcaccataaccatgctt |
7398833 |
T |
|
| Q |
277 |
aatcattaattatt |
290 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7398832 |
aatcattaattatt |
7398819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University