View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17041_low_22 (Length: 255)
Name: NF17041_low_22
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 33494779 - 33494560
Alignment:
| Q |
16 |
gcagagagaaggtacattttattcaaagtaaaaataactttgaagtcattatttagaatgtaataataataaaataaattatcatgataattattgatta |
115 |
Q |
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| T |
33494779 |
gcagagagaaggtacattttattcaaagtaaaaataactttgaagtgattatttagaatgtaataataataaaataaattatcatgataattattgatta |
33494680 |
T |
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| Q |
116 |
tggttcttaatttttga-nnnnnnnnncaggtgtttaactttgtaaaattagctgagctgtactatgcagcaagccatggcatggacattatgggaccaa |
214 |
Q |
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| T |
33494679 |
tggttcttaatttttgattttttttttcaggtgtttaactttgtaaaattagctgagctgtactatgcagcaagccatggcatggacattatgggaccaa |
33494580 |
T |
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| Q |
215 |
caaaaaaccgaagtgctgag |
234 |
Q |
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|||||||||||||||||||| |
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| T |
33494579 |
caaaaaaccgaagtgctgag |
33494560 |
T |
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