View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17041_low_29 (Length: 218)

Name: NF17041_low_29
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17041_low_29
NF17041_low_29
[»] chr8 (1 HSPs)
chr8 (8-200)||(35401122-35401313)
[»] chr7 (3 HSPs)
chr7 (45-95)||(11452647-11452697)
chr7 (46-95)||(11380546-11380595)
chr7 (49-95)||(11403949-11403995)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 35401122 - 35401313
Alignment:
Q  8 ggacatcatcatcactagtctctttgaannnnnnnnnaccttttcaattaatggaacaataaataatctgaaactcttgatattataacacacgtcctta 107  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35401122 ggacatcatcatcactagtctctttgaatttttttt-accttttcaattaatggaacaataaataatctgaaactcttgatattataacacacgtcctta 35401220  T
Q  108 cgaacgtctattaaaatagatggaaatcatattgcatagtagtattataatttcttgatgtgtattattatatgaatatgatcatgcacattt 200  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35401221 cgaacgtctattaaaagagatggaaatcatattgaatagtagtattataatttcttgatgtgtattattatatgaatatgatcatgcacattt 35401313  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 11452647 - 11452697
Alignment:
Q  45 accttttcaattaatggaacaataaataatctgaaactcttgatattataa 95  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11452647 accttttcaatgaatggaacaataaataatctgaaactcttgatattataa 11452697  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 11380546 - 11380595
Alignment:
Q  46 ccttttcaattaatggaacaataaataatctgaaactcttgatattataa 95  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11380546 ccttttcaatgaatggaacaataaataatctgaaactcttgatattataa 11380595  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 11403949 - 11403995
Alignment:
Q  49 tttcaattaatggaacaataaataatctgaaactcttgatattataa 95  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  11403949 tttcaatgaatggaacaataaataatctgaaactcttgatattataa 11403995  T

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