View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17041_low_4 (Length: 465)
Name: NF17041_low_4
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 28 - 447
Target Start/End: Original strand, 2304625 - 2305039
Alignment:
| Q |
28 |
ttcagcatcatccccttgatgatgagacatgcttgatcaattgaagctatatcataaaaattaacatcaagatatcatactctacatcattcatatatga |
127 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2304625 |
ttcagcatcatcctcttgatgatgagacatgcttgaccaattgaagctatatcataaaaattaacatcaagatatcatactctacatcattaatatatga |
2304724 |
T |
|
| Q |
128 |
ctatagcagttaatgattctattgttctttatttgaattttacaagtaacaagttttaggaattggaaaagcatataataaaatgatgatagatatatgc |
227 |
Q |
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|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2304725 |
ctatagcaattagtgattgtattgttctttatttgaattttacaagtaacaagtattaggaattggaaaagcatataataaaatgatgatagatatatgc |
2304824 |
T |
|
| Q |
228 |
agctaacctttgattgtaagaagagctgtgtggacttgttctcagaaataggaaatgattaacactgctacaaatatctatatctttagtctcttactca |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2304825 |
agctaacctttgattgtaagaagagctgtgtggacttgttctcagaaataggaaatgattaacactgctacaaatatctatatctttagtctcttactga |
2304924 |
T |
|
| Q |
328 |
caaagtcttttctttccaactactgacccacagtgggtccctccacttcattaaaggtagaggagttgaggaagcatgcatgtaacttaacttggtaaac |
427 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2304925 |
caaagtctcttctttccaactactgacccacagtgggtccctccacttc-ttaaaggtagaggagttgaggaa----gcatgtaacttaacttggtaaac |
2305019 |
T |
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| Q |
428 |
atcaattctaacccttcttc |
447 |
Q |
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|||||||||||||||||||| |
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| T |
2305020 |
atcaattctaacccttcttc |
2305039 |
T |
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