View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17041_low_5 (Length: 450)

Name: NF17041_low_5
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17041_low_5
NF17041_low_5
[»] chr3 (3 HSPs)
chr3 (93-270)||(33494942-33495119)
chr3 (362-450)||(33494762-33494850)
chr3 (16-54)||(33495176-33495214)
[»] chr5 (1 HSPs)
chr5 (199-253)||(26144090-26144144)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 93 - 270
Target Start/End: Complemental strand, 33495119 - 33494942
Alignment:
Q  93 aatttttagttgacttcttattatttgtgcttgcagctttatcatccttcagcactgaaattgtttgatcaaatattgtttagtgcaaaaggaaaacaga 192  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  33495119 aatttttagttgacttcttattatttgtgcttgcagctttatcacccttcagcactgaaattgtttgatcaaatattgtatagtgcaaaaagaaaacaga 33495020  T
Q  193 tagtgttttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagctttcatgactagaaagg 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33495019 tagtgttttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagctttcatgactagaaagg 33494942  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 33494850 - 33494762
Alignment:
Q  362 atgaaactagatgagagcaacacttaaagatatagcaagaaatttcccaacagccatcgtgacaggaaggtgcagagagaaggtacatt 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33494850 atgaaactagatgagagcaacacttaaagatatagcaagaaatttcccaacagccatcgtgacaggaaggtgcagagagaaggtacatt 33494762  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 33495214 - 33495176
Alignment:
Q  16 tcagaaaatcaggaaaaatgttcttggattgtaagcata 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33495214 tcagaaaatcaggaaaaatgttcttggattgtaagcata 33495176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 26144144 - 26144090
Alignment:
Q  199 tttttcttgactatgatggtactctctcacctattgttgccgatccagaaaaagc 253  Q
    ||||||||||||||||||| |||||||| || ||||| || |||||||| |||||    
T  26144144 tttttcttgactatgatggaactctctccccaattgtagcagatccagataaagc 26144090  T

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