View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17041_low_6 (Length: 432)
Name: NF17041_low_6
Description: NF17041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17041_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 12820671 - 12820897
Alignment:
| Q |
1 |
ttcagatattttcctagtggctgggttccagatatggaaccagtagtttcgatgctcagttgtgttagaagtaccaaacaaacatagcaatccattacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12820671 |
ttcagatattttcctagtggctgggttccagatatggaaccagtagttttgatattcagttgtgttagaactaccaaacaaacatagcaatccattacat |
12820770 |
T |
|
| Q |
101 |
gaaccaaccattcgggtgaagttattaaactcgagtcgtttgtaacagtcgctgtccacagtgatcaatgaggggttttctagtagatgattcagtggaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12820771 |
gaaccaaccattcgggtgaaattattaaactcgagt-gtttgtaacagtcgctgtcgacggtgatcaatgaggggttttctagtagacgattcagtggaa |
12820869 |
T |
|
| Q |
201 |
aagttatgacactggaaactgaacgtgc |
228 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
12820870 |
aagttacgacactggaaactgaacgtgc |
12820897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 19638001 - 19638060
Alignment:
| Q |
280 |
aaggtgcaatttgacgaaagtgggatcggaagagatgagtgtgttccatgacttgcagacaca |
342 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
19638001 |
aaggtgtaatttgacaaaagtgggatc---agagatgatggttttccatgacttgcagacaca |
19638060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 29821105 - 29821143
Alignment:
| Q |
5 |
gatattttcctagtggctgggttccagatatggaaccag |
43 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
29821105 |
gatattatcctagtggctgggttccagatctggaaccag |
29821143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 553829 - 553757
Alignment:
| Q |
283 |
gtgcaatttgacgaaagtgggatcggaagagatgagtgtgttccatgacttgcagacacaccttattcgcataaga |
358 |
Q |
| |
|
||||| ||||| |||||| ||||| ||||||||| ||||||||||| ||||| |||||| | |||||||||||| |
|
|
| T |
553829 |
gtgcattttgatgaaagttggatc---agagatgagggtgttccatgatttgcaaacacacttcattcgcataaga |
553757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 5437680 - 5437732
Alignment:
| Q |
311 |
gagatgagtgtgttccatgacttgcagacacaccttattcgcataagagattt |
363 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| | ||| |||||||| |||| |
|
|
| T |
5437680 |
gagatgagggtgttccatgacttgcaaacacacttcatttgcataagatattt |
5437732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University