View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17042_high_1 (Length: 433)
Name: NF17042_high_1
Description: NF17042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17042_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 189 - 422
Target Start/End: Original strand, 6664375 - 6664608
Alignment:
| Q |
189 |
attaggtgtgatgtttagtgtaaatccattaggttgaagtttttcaattactactatataaacctcaaaccaaccagtcctcattcctgcatacaagcaa |
288 |
Q |
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| T |
6664375 |
attaggtgtgatgtttagtgtaaatccattaggttgaagtttttcaattactactatataaacctcaaaccaaccagtcctcattcctgcatacaagcaa |
6664474 |
T |
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| Q |
289 |
ccattacagtaaacagggtcactaaaacaggccatatcttcctgtggaatgtgttcaccctccgtggctgcaaccctcacgatcaagtcataaaagcaca |
388 |
Q |
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| T |
6664475 |
ccattacagtaaacagggtcactaaaacaggtcatatctccctgtggaatgtgttcaccctccatggctgcaaccctcacgatctcgtcataaaagcaca |
6664574 |
T |
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| Q |
389 |
ctttagtccattgcttatctccaagtttgtagta |
422 |
Q |
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| T |
6664575 |
ctttagtacattgcttatctccaagttggtagta |
6664608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 6664155 - 6664334
Alignment:
| Q |
11 |
aagcaaaggttgagtcacgattagatataaagaacattttatcctttatggtttcaatcttttcacccattctttgagtacaataaaatttgtaaacaaa |
110 |
Q |
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| T |
6664155 |
aagcaaaggctgagtcaacactagatataaagaaaactgtatccttaacgctttcaaccttttcccacactctttgagtacaataaaatttgtaaacaaa |
6664254 |
T |
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| Q |
111 |
aactgcagtaaccctatccagtgcatgcataatttctattcgaaatagtgcgttgttgagtccaatcaagtgacttatat |
190 |
Q |
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| T |
6664255 |
aactgcagtaaccctatccagtgcatgcataatttctattcgaaatagtgcgttgttgaatccaatcaagtgacttatat |
6664334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 6680950 - 6680906
Alignment:
| Q |
378 |
ataaaagcacactttagtccattgcttatctccaagtttgtagta |
422 |
Q |
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| T |
6680950 |
ataaaagcacactttagtccattgcttatctccaagttggtagta |
6680906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 190
Target Start/End: Complemental strand, 6675973 - 6675864
Alignment:
| Q |
82 |
ctttgagtacaataaaatttgtaaacaaaaactgcagtaa-ccctatccagtgcatgcataatttctattcgaaatagtgcgttgttgagtccaatcaag |
180 |
Q |
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| T |
6675973 |
ctttgagaacaatcaaatttgtaaacataaactgcagtaaacccaatcttataaatagaaaatttctattcgaaatagtacattgttggatcctatcaag |
6675874 |
T |
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| Q |
181 |
tgacttatat |
190 |
Q |
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| T |
6675873 |
tgacttatat |
6675864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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