View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17042_high_4 (Length: 356)
Name: NF17042_high_4
Description: NF17042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17042_high_4 |
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| [»] scaffold0756 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 38840384 - 38840714
Alignment:
| Q |
15 |
aacaacaacgggaaaacgacacatgcactggcacatagagaaaaacgaaccttggcaggggtgcaggtttggacttctcagcacatttcaggaagaggtc |
114 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840384 |
aacaacaacgggaaaacgacacatgcaccggcacatagagaaaaacgaaccttggcaggggtgcaggtttggacttctcagcacatttcaggaagaggtc |
38840483 |
T |
|
| Q |
115 |
aacataatcgcggaacgacataaaacagatcaaggtgccattgagttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttc |
214 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840484 |
aacataatcgcggaaagacataaaacagatcaaggtgccattgagttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttc |
38840583 |
T |
|
| Q |
215 |
atcaaagcaacaaggtcctcttcaagatatgtcattttgaacttttccaagtcaggcttaaaggttacctttgtccagttctcactagcattgcattcgg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38840584 |
atcaaagcaacaaggtcctcttcaagatatgtcattttgaacttttccaagtcaggcttaaaggttacctttgtccagttctcactagcattgcattcgg |
38840683 |
T |
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| Q |
315 |
ttatcactggctcagactttgtccccatatt |
345 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
38840684 |
ttatcactggctcagactttgtccccatatt |
38840714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 62 - 345
Target Start/End: Original strand, 9875571 - 9875854
Alignment:
| Q |
62 |
aaccttggcaggggtgcaggtttggacttctcagcacatttcaggaagaggtcaacataatcgcggaacgacataaaacagatcaaggtgccattgagtt |
161 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| ||| ||| |||||| |||| ||||| ||||||| |
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| T |
9875571 |
aaccttggcaggggactgggtttggacttctcagcacatttcaggaagagctcagcataatctttgaaagacttaaaacgaatcactgtgccgttgagtt |
9875670 |
T |
|
| Q |
162 |
caaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaacttttc |
261 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||| || |
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| T |
9875671 |
caaccttaacagtctttccaaggcaccctgccatgtccagcacacgctttttcatcaaagcaacaacgtcctcttcaagataggtcattttaaacttctc |
9875770 |
T |
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| Q |
262 |
caagtcaggcttaaaggttacctttgtccagttctcactagcattgcattcggttatcactggctcagactttgtccccatatt |
345 |
Q |
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|||||||||||||||||| ||||| |||||||||||| |||| || |||| |||||||||||| |||||||| |||||||||| |
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| T |
9875771 |
caagtcaggcttaaaggtcaccttggtccagttctcattagctttacatttggttatcactggatcagacttcttccccatatt |
9875854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 279
Target Start/End: Original strand, 3773 - 3894
Alignment:
| Q |
158 |
agttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaact |
257 |
Q |
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||||||||| ||||||| | |||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||||||||||| | ||||| | |||| |
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| T |
3773 |
agttcaaccgtaacagtatcaccaaggcaccctgccatatccagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatctgaaact |
3872 |
T |
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| Q |
258 |
tttccaagtcaggcttaaaggt |
279 |
Q |
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| T |
3873 |
tggttaagtcaggcttaaaggt |
3894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 279
Target Start/End: Complemental strand, 20098486 - 20098365
Alignment:
| Q |
158 |
agttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtcattttgaact |
257 |
Q |
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||||||||| ||||||| | ||||||||||||||||| |||| ||||||||| ||||||||||| |||| ||||||||||||| | ||||||| |||| |
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| T |
20098486 |
agttcaaccgtaacagtatcaccaaggcaccctgccatgtccagcacacgctttttcatcaaagctacaacgtcctcttcaagacaggtcatttcaaact |
20098387 |
T |
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| Q |
258 |
tttccaagtcaggcttaaaggt |
279 |
Q |
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| T |
20098386 |
tggttaagtcaggcttaaaggt |
20098365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 33371810 - 33371937
Alignment:
| Q |
149 |
gtgccattgagttcaaccttaacagtctttccaaggcaccctgccatatccaacacacgcttcttcatcaaagcaacaaggtcctcttcaagatatgtca |
248 |
Q |
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||||| |||||| ||||| ||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||| | || ||||| |||||||| ||| |
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| T |
33371810 |
gtgccgttgagtacaaccgtaacagtctcaccaaggcacactgccatgtccaacacacgctttttcatcaaagctataacgtccttttcaagattcttca |
33371909 |
T |
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| Q |
249 |
ttttgaacttttccaagtcaggcttaaa |
276 |
Q |
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| T |
33371910 |
tatcaaacttatccaagtcaggcttaaa |
33371937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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