View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17042_low_3 (Length: 387)
Name: NF17042_low_3
Description: NF17042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17042_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 103 - 375
Target Start/End: Complemental strand, 4472867 - 4472595
Alignment:
| Q |
103 |
ctattttgatttctcaattttacttaaataaatgtttaattcaacttctgaattaaagattaactgttaaaaattaagagatcaaaactgtacaacatca |
202 |
Q |
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| T |
4472867 |
ctattttgatttctcaattttacttaaacgaatgttcaattcaacttctgaattaaagattaacggttaaaaattaagagatcaaaactgtacaacatca |
4472768 |
T |
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| Q |
203 |
atatgtgggtgtgaaccctatatataagtgtatctgtgcgcatgcgcatgcatgtgagttgtttttatcaaagtctttttcaaatttctgttttagatgg |
302 |
Q |
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| T |
4472767 |
atacgtgggtgtgaaccctatatatatgtgtatctctgcgcatgcgcatgcatgtgagttgtttttatcaaagtctttttcaaatttctgttttagatgg |
4472668 |
T |
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| Q |
303 |
taagatagcattttggtatgagctgttttctatgcacaacagatcctatcacgtacaattctaacattatgat |
375 |
Q |
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| T |
4472667 |
gaagatagcattttggtatgagctgttttctatgcacaacagatcctatcacgtacaattctaacatgatgat |
4472595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 4473000 - 4472923
Alignment:
| Q |
1 |
ttgttttagatcaatgaaaatttatattttttcacataaaacttgtgaaatattatttttattaaacgatttgggattt |
79 |
Q |
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| T |
4473000 |
ttgttttagatcaatgaaa-tttatattttttcacataaaacttgtgaaatattatttttattaaacgatttgggattt |
4472923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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