View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17042_low_6 (Length: 340)

Name: NF17042_low_6
Description: NF17042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17042_low_6
NF17042_low_6
[»] chr4 (3 HSPs)
chr4 (12-332)||(53651342-53651662)
chr4 (1-93)||(56459726-56459818)
chr4 (255-289)||(33960137-33960171)
[»] chr7 (3 HSPs)
chr7 (122-332)||(17490365-17490575)
chr7 (122-332)||(17562639-17562849)
chr7 (255-287)||(39323255-39323287)
[»] chr5 (1 HSPs)
chr5 (1-89)||(34064857-34064945)
[»] chr1 (1 HSPs)
chr1 (1-93)||(19402325-19402417)
[»] chr8 (1 HSPs)
chr8 (1-75)||(35751627-35751701)
[»] chr3 (1 HSPs)
chr3 (33-136)||(54515789-54515893)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 53651662 - 53651342
Alignment:
Q  12 tagtgagaatgaatattttacatgagaatgatgagaacacttatgaacggttagattaaaaataaacggtcaagattacaaacaacattttgaacaacca 111  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  53651662 tagtgagaatggatatcttacatgagaatgatgagaacacttatgaacggttagattaaaaataaacagtcaagattaaaaacaacattttgaacaacca 53651563  T
Q  112 tatgactctccatagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaacagcaatttcaagacagatctgagaaaatcattc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53651562 tatgactctccatagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaacagcaatttcaagacagatatgagaaaatcattc 53651463  T
Q  212 cattgagattattaaccccagctgtaagtattttatgaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaa 311  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| |||    
T  53651462 cattgagattattaaccctagctgtaagtattttatgaaattgtaattctagatctagatgaattttacaaaattgtttaatatgacaattaaactcaaa 53651363  T
Q  312 aattaaattccttcctatgct 332  Q
    ||| |||||||||||||||||    
T  53651362 aatgaaattccttcctatgct 53651342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 56459818 - 56459726
Alignment:
Q  1 gaggatgtatctagtgagaatgaatattttacatgagaatgatgagaacacttatgaacggttagattaaaaataaacggtcaagattacaaa 93  Q
    |||||||| |||| ||||||||| |   ||| ||||||||| ||||||||||||| |||  |||||||||||||||| |||| ||||||||||    
T  56459818 gaggatgtttctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagattacaaa 56459726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 33960171 - 33960137
Alignment:
Q  255 aaattctagatctagatgaatttgaaaaaattgtt 289  Q
    ||||||||||||||||||||||||| |||||||||    
T  33960171 aaattctagatctagatgaatttgacaaaattgtt 33960137  T

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Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 122 - 332
Target Start/End: Original strand, 17490365 - 17490575
Alignment:
Q  122 catagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaacagcaatttcaagacagatctgagaaaatcattccattgagatt 221  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17490365 catagcctatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagatt 17490464  T
Q  222 attaaccccagctgtaagtattttatgaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaattaaattc 321  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17490465 attaaccctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattc 17490564  T
Q  322 cttcctatgct 332  Q
    |||||||||||    
T  17490565 cttcctatgct 17490575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 122 - 332
Target Start/End: Complemental strand, 17562849 - 17562639
Alignment:
Q  122 catagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaacagcaatttcaagacagatctgagaaaatcattccattgagatt 221  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17562849 catagcctatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagatt 17562750  T
Q  222 attaaccccagctgtaagtattttatgaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaattaaattc 321  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17562749 attaaccctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattc 17562650  T
Q  322 cttcctatgct 332  Q
    |||||||||||    
T  17562649 cttcctatgct 17562639  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 39323255 - 39323287
Alignment:
Q  255 aaattctagatctagatgaatttgaaaaaattg 287  Q
    ||||||||||||||||||||||||| |||||||    
T  39323255 aaattctagatctagatgaatttgacaaaattg 39323287  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 34064945 - 34064857
Alignment:
Q  1 gaggatgtatctagtgagaatgaatattttacatgagaatgatgagaacacttatgaacggttagattaaaaataaacggtcaagatta 89  Q
    ||||||||||||| ||||||||| |   ||| ||||||||| ||||||||||||| |||  |||||||||||||||| |||| ||||||    
T  34064945 gaggatgtatctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagatta 34064857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 19402325 - 19402417
Alignment:
Q  1 gaggatgtatctagtgagaatgaatattttacatgagaatgatgagaacacttatgaacggttagattaaaaataaacggtcaagattacaaa 93  Q
    |||||||| |||| ||||||||| |   ||| ||||||||| ||||||||||||| |||  |||||||||||||||| |||| ||||||||||    
T  19402325 gaggatgtttctaatgagaatgacttaattatatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagattacaaa 19402417  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35751701 - 35751627
Alignment:
Q  1 gaggatgtatctagtgagaatgaatattttacatgagaatgatgagaacacttatgaacggttagattaaaaata 75  Q
    ||||||||||||  ||||||||| ||||||| ||||||||||||||||   ||||| ||  ||||||||||||||    
T  35751701 gaggatgtatcttatgagaatgactattttatatgagaatgatgagaatgattatggactattagattaaaaata 35751627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 54515789 - 54515893
Alignment:
Q  33 atgagaatgatgagaacacttatgaacggttagattaaaaataaacggtcaagattacaaacaacattttgaacaa-ccatatgactctccatagcctat 131  Q
    |||||||||||||||| |||| |||||  |||||| ||| ||||| | |  |||||| ||||| |||||| ||||| |||| ||||||||| || |||||    
T  54515789 atgagaatgatgagaatacttgtgaacctttagatcaaatataaatgattcagattaaaaacatcattttaaacaatccatgtgactctccctatcctat 54515888  T
Q  132 caatt 136  Q
    |||||    
T  54515889 caatt 54515893  T

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