View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_high_1 (Length: 1000)
Name: NF17043_high_1
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 20 - 710
Target Start/End: Original strand, 37190573 - 37191259
Alignment:
| Q |
20 |
tccaccagaaagggaataccagtggttgtcagggaccatccacatttaggattatacaaaagagacgttg---ttgttccattttatgtatcgatcaacg |
116 |
Q |
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| T |
37190573 |
tccaccagaaagggaatacca-----tgtcagggaccatccacatttaggattatacaaaagagacgttgttgttgttccattttatgtatcgatcaacg |
37190667 |
T |
|
| Q |
117 |
ttaacggcagaagcaatagaagaaaagctacatatgaagcatgtctttccctcgttccatccccaccacgtcatcaactctcgaatcttcttcacttgat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
37190668 |
ttaacggcagaagcaatagaagaaaagctacatatgaagcatgtctttccctcgttccatcccgaccacgtcatcaactcccgaatcttcttcacttgat |
37190767 |
T |
|
| Q |
217 |
tcattccgttaccacagcaacaccgtcgtaatgaccccaaaaccacaacgcttcaagcgagtcgccaaacccccaaccaccccgccacgtaaaacgcggc |
316 |
Q |
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| T |
37190768 |
tcattccgttaccacagcaacaccgtcgtaatgaccccaaaaccacaacgcttcaagcgagtagccaaacccccaaccaccccgccacgtaaaacgcggc |
37190867 |
T |
|
| Q |
317 |
gttccatattacccaacccatcatcttcatcagaaccgcacatttcattcgaaaatgcaaaacctttgcctcgcgagttctttcaaatcgacgcactaga |
416 |
Q |
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| T |
37190868 |
gttccatattacccaacccatcatcttcatcagaaccgcacatttcattcgaaaatacaaaacctttgcctcgcgagttctttcaaatcgacgcactaga |
37190967 |
T |
|
| Q |
417 |
ccttgcccctcgtttgcttgggaagtttctccgtagagacgacgttgttcttcagattaccgaggtaaggcccttttcgataagtcaatttaatccttaa |
516 |
Q |
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| T |
37190968 |
ccttgcccctcgtttgcttgggaagtttctccgtagagacgacgttgttcttcagattaccgaggtaaggcccttttcgataagtcaatttaatccttaa |
37191067 |
T |
|
| Q |
517 |
tatcagacatcttttgattaacttatctaccaacttgagctttgtgagactgattgggacttgagaattgcgacaacttttgaaaacaacttatcacatt |
616 |
Q |
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|||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37191068 |
tatcagacatgttttgattaacttattt--taacttgagctttgtgagactgattgggacttgagaattgcgacaacttttgaaaacaacttatcacatt |
37191165 |
T |
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| Q |
617 |
catcagcttgtaaaaacagtttatatctttgtaacttctaattcaagataaccgcaatcattttctctcaacagttccttagttttaggtacaa |
710 |
Q |
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| T |
37191166 |
gatcagcttgtaaaaacagtttatatctttgtaacttctaattcaagataaccgcaatcattttctcttaacagttccttagttttaggtacaa |
37191259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 769 - 991
Target Start/End: Original strand, 37191317 - 37191539
Alignment:
| Q |
769 |
acgatttaacaaggaattaatgttggataggttgaagcatatagatcaaatgactcagctagtcatggtcggtttggtattactccaagaactgctcccg |
868 |
Q |
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| T |
37191317 |
acgatttaacaaggaattaatgttggataggttgaagcatatagatcaaatgactcagctagtcatggtcggtttggtattactccaagaactgctcccg |
37191416 |
T |
|
| Q |
869 |
ttgtaagatgcttannnnnnngtcaccttttttatcatttacataagcttgttcatgttgggtatttgaattctctaccttatattgaagatgctaagtt |
968 |
Q |
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| T |
37191417 |
ttgtaagatgcttatttttttgtcaccttttttatcatttacataagcttgttcatgttgggtatttgaattctctaccttatattgaagatgctaagtt |
37191516 |
T |
|
| Q |
969 |
aagttatgtagagtgatgatgtc |
991 |
Q |
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|||||||||||||||||| |||| |
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| T |
37191517 |
aagttatgtagagtgatgttgtc |
37191539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 13419457 - 13419365
Alignment:
| Q |
343 |
tcatcagaaccgcacatttcattcgaaaatgcaaaacctttgcctcgcgagttctttcaaatcgacgcactagaccttgcccctcgtttgcttg |
436 |
Q |
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|||| |||||| ||||||||||||||||| |||||| |||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
13419457 |
tcataagaaccacacatttcattcgaaaaaacaaaac-tttgccacgcgagttatttcaaatcgatgcaccagaccttgcccctcgtttgcttg |
13419365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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