View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17043_high_12 (Length: 457)
Name: NF17043_high_12
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 19958931 - 19959124
Alignment:
| Q |
18 |
aaatcaagcaaggaggattgaaggaaaaatagtgcgattagggaaatacgaattgggaaaaacacttggtgaaggaaattttggaaaagttaaattggct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19958931 |
aaatcaagcaaggaggattgaaggaaaaatagtgcgattagggaaatacgaattgggaaaaacacttggtgaaggaaattttggaaaagtgaaattggct |
19959030 |
T |
|
| Q |
118 |
agggatactgattgtggacaattttttgctgttaagattcttgaaaagaataagattgttgatcttaacaacactgatcaggtttgtgtttcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19959031 |
agggatactgattgtggacaattttttgctgttaagattcttgaaaagaataagattgttgatcttaataacactgatcaggtttgtgtttcat |
19959124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 326 - 447
Target Start/End: Original strand, 19959313 - 19959434
Alignment:
| Q |
326 |
ttgaaaaactaagtttattttgatttgtgatggttgaaaatttcagataaagagggagatatcaactttgaagcttctgaaacatcctaatgttgttaga |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19959313 |
ttgaaaaactaagtttattttgatttgtgatggttgaaaatttcagataaagagggagatatcaaccttgaagcttctgaaacatcctaatgttgttaga |
19959412 |
T |
|
| Q |
426 |
ttatacgaggtaacatcctatg |
447 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19959413 |
ttatacgaggtaacatcctatg |
19959434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 250
Target Start/End: Original strand, 19959150 - 19959180
Alignment:
| Q |
220 |
aatctcttttgtgtttttattacaaattgat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
19959150 |
aatctcttttgtgtttttattacaaattgat |
19959180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 932364 - 932233
Alignment:
| Q |
26 |
caaggaggattgaaggaaaaatagtgcgattagggaaatacgaattgggaaaaacacttggtgaaggaaattttggaaaagttaaattggctagggatac |
125 |
Q |
| |
|
|||| |||| |||||||||| |||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
932364 |
caagaaggaatgaaggaaaagtagtgcaattaggaaaatatgaattaggaaaaacacttggtgaaggaaattttggaaaagttaaattggctaggggtac |
932265 |
T |
|
| Q |
126 |
tgattgtggacaattttttgctgttaagattc |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
932264 |
cgattgtggacaattttttgctgttaagattc |
932233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 438
Target Start/End: Complemental strand, 51100398 - 51100322
Alignment:
| Q |
362 |
aaaatttcagataaagagggagatatcaactttgaagcttctgaaacatcctaatgttgttagattatacgaggtaa |
438 |
Q |
| |
|
|||||| |||||||||||||| |||| | |||||||| || | ||||| |||||||||| |||||||||||||| |
|
|
| T |
51100398 |
aaaattgcagataaagagggaaatatgtgccttgaagctcctaaggcatcccaatgttgttaaattatacgaggtaa |
51100322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University