View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_high_19 (Length: 387)
Name: NF17043_high_19
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 41038668 - 41039018
Alignment:
| Q |
18 |
atcctcgtccatttacaatatcagcaaagtcaatgaaaggatcaaccaagagtataacaggacctccatactcgctgaaaatctgttcaattcaatcatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038668 |
atcctcgtccatttacaatatcagcaaagtcaatgaaaggatcaaccaagagtataacaggacctccatactcgctgaaaatctgttcaattcaatcatg |
41038767 |
T |
|
| Q |
118 |
gtcacagaatatattcaaacaatgcaaattatatattctgaattaaccttacaaattactaaaacatgaaagtattgatatcgtacacagaaggaaatga |
217 |
Q |
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| T |
41038768 |
gtcacagaatatattcaaacaatgcaaattatatattctgaattaaccttacaaattactaaaacatgaaagtattgatatcgtacacagaaggaaatga |
41038867 |
T |
|
| Q |
218 |
gaaaggttgtttgcatttggtagtggcatagcgaattaaatgagtaacgttgtttatatgtaaaagtatttttactatgacatgtttcgtgtgtcatgac |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41038868 |
gaaaggttgtttgcatttggtagtggcatagcgaagtaaatgagtaacgttgtttatatgtaaaagtatttttactatgacatgtttcgtgtgtcatgac |
41038967 |
T |
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| Q |
318 |
atcaactttgacaagtcacaatgtcaaatgtgacacgtcaacacctccagt |
368 |
Q |
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| T |
41038968 |
atcaactttgacaagtcacaatgtcaaatgtgacacatcaacacctccagt |
41039018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 42616186 - 42616302
Alignment:
| Q |
18 |
atcctcgtccatttacaatatcagcaaagtcaatgaaaggatcaaccaagagtataacaggacctccatactc-------gctgaaaatctgttcaattc |
110 |
Q |
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| T |
42616186 |
atcctcggtcatttacaatatcagccatgtcaatgaaaggatcaaccaagagtgtaccaggacctccatactcggaatgtgctgaaaatctgttcaattc |
42616285 |
T |
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| Q |
111 |
aatcatggtcacagaat |
127 |
Q |
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|||||| | |||||||| |
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| T |
42616286 |
aatcatagccacagaat |
42616302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 42616874 - 42616953
Alignment:
| Q |
130 |
attcaaacaatgcaaattatatattctgaattaaccttacaaattactaaaacatgaaagtattgatatcgtacacagaa |
209 |
Q |
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||||||||||||||||| ||||||||| |||| || || |||||||| ||||||||||| ||||||| || || |||||| |
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| T |
42616874 |
attcaaacaatgcaaatgatatattctaaatttacattgcaaattaccaaaacatgaaaatattgatttcatagacagaa |
42616953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 26444885 - 26444957
Alignment:
| Q |
18 |
atcctcgtccatttacaatatcagcaaagtcaatgaaaggatcaaccaagagtataacaggacctccatactc |
90 |
Q |
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| T |
26444885 |
atcctcgttcgtttacaatatcagccatgtcaatgaaaggatcaaccaagagtgtaccaggacctccatactc |
26444957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 26445650 - 26445718
Alignment:
| Q |
130 |
attcaaacaatgcaaattatatattctgaattaaccttacaaattactaaaacatgaaagtattgatat |
198 |
Q |
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| T |
26445650 |
attcaaacaatgcaaataatatattctaaattaaccttgcaaattaccaaaacatgaaaatattgatat |
26445718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 26444973 - 26445009
Alignment:
| Q |
91 |
gctgaaaatctgttcaattcaatcatggtcacagaat |
127 |
Q |
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| T |
26444973 |
gctgaaaatctgttcaattcaatcatagtcacagaat |
26445009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 26446998 - 26447035
Alignment:
| Q |
206 |
agaaggaaatgagaaaggttgtttgcatttggtagtgg |
243 |
Q |
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|||||||||||||||| ||||| ||||||||||||||| |
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| T |
26446998 |
agaaggaaatgagaaacgttgtatgcatttggtagtgg |
26447035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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