View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_high_22 (Length: 350)
Name: NF17043_high_22
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 54619726 - 54620050
Alignment:
| Q |
17 |
agtaataatagtcaaagtgtcaaactaaacataacactttgtatgtaccaaatgaaccttaaaccagtgattcaattaagccttatccatttagttggga |
116 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54619726 |
agtaataatagtcaaagtgtcacactaaacataacactttgtatgtaccaaattaaccttaaaccagtgattcaattaagccttatccatttagttggga |
54619825 |
T |
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| Q |
117 |
taaagcagaaagaaaacactgaacatgttannnnnnnn--agagagcagggatagtggaccatcataaagtagccaattggggacagaataagagggtgt |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54619826 |
taaagcagaaagaaaacactgaacatgttaggggggggggagagagcagggatagtggaccatcataaagtagccaattggggacagaataagagggtgt |
54619925 |
T |
|
| Q |
215 |
tgattgagacagtgatagctaagccacagaatgatgaatacatagctctaagtatgcggtgtaaaggagtgttatgggcagacatttctttgtctccaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54619926 |
tgattgagacagtgatagctaagccacagaatgatgaatacatagctctaagtatgcggtgtaaaggagtgttatgggcagacatttctttgtctccaat |
54620025 |
T |
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| Q |
315 |
ttattagaatcatattttgtctctg |
339 |
Q |
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||||||||||||||||||||||||| |
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| T |
54620026 |
ttattagaatcatattttgtctctg |
54620050 |
T |
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