View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17043_high_23 (Length: 346)
Name: NF17043_high_23
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 26 - 333
Target Start/End: Original strand, 27794690 - 27794998
Alignment:
| Q |
26 |
atttacttggacttgttatgcttcttaaaaattattttgcaattgtatatacagtaaaaatttatatttcttgatattttaatcaa-ccctagaaaaata |
124 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
27794690 |
atttacttgcacttgttatgcttcttacaaattattttgcaattgtatatacagtaaaaatttatatttcgtgatattttaatcaaaccctagaaaaata |
27794789 |
T |
|
| Q |
125 |
tttaatcaattaattttttgaccaaatttaataaattaattagtaagtatataccaatacacagataaaatctggctaaataacttatatcacacaaata |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27794790 |
tttaatcaattaattttttgaccaaatttaataaattaattagtaattatataccaatacacagataaaatctggctaattaacttatatcacacaaata |
27794889 |
T |
|
| Q |
225 |
tttttcaaaataaaaaatttatattacacaaccagttcctaatttcctcaaattatgatctagctgtgtgtgtaattgcaacagaatttttctaatatga |
324 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27794890 |
tttttcaaaataaaaaacttatattacacaaccagttcctaatttcctgaaattatgatctagctgtgtgtgtaattgcaacataatttttctaatatga |
27794989 |
T |
|
| Q |
325 |
agctattat |
333 |
Q |
| |
|
||||||||| |
|
|
| T |
27794990 |
agctattat |
27794998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University