View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17043_high_28 (Length: 274)
Name: NF17043_high_28
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 10866855 - 10866614
Alignment:
| Q |
18 |
gaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
117 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||| |
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| T |
10866855 |
gaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10866756 |
T |
|
| Q |
118 |
gaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttc |
217 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
10866755 |
gaccggcaacacccaccggaatctgaacaaaccctatcggcatctcgcaacactgtcctaatatagaattgtagtcaaaaccttccatcggtaaaccttc |
10866656 |
T |
|
| Q |
218 |
aagtgaccttccggtaactctctccactgcttggttcctaat |
259 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10866655 |
aagtgaccttccggtaactctctccaccgcttggttcctaat |
10866614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 10887510 - 10887758
Alignment:
| Q |
18 |
gaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || || ||||| |||||||||| |
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|
| T |
10887510 |
gaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtattcattcccgtcgagcaacaaag |
10887609 |
T |
|
| Q |
118 |
gaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttc |
217 |
Q |
| |
|
|||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
10887610 |
gaccggcaacacccaccggaatttgaacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaacctttcatcggtaaaccttc |
10887709 |
T |
|
| Q |
218 |
aagtgaccttccggtaactctctccactgcttggttcctaatctctgct |
266 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
10887710 |
aagtgaccttccggtaaccctctccactgcttggttcctaatctttgct |
10887758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 10873450 - 10873691
Alignment:
| Q |
18 |
gaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
117 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||| |
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|
| T |
10873450 |
gaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10873549 |
T |
|
| Q |
118 |
gaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttc |
217 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
10873550 |
gaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttc |
10873649 |
T |
|
| Q |
218 |
aagtgaccttccggtaactctctccactgcttggttcctaat |
259 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10873650 |
aagtgaccttccggtaactctctccacggcttggttcctaat |
10873691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 10878521 - 10878762
Alignment:
| Q |
18 |
gaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
117 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||| |
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|
| T |
10878521 |
gaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10878620 |
T |
|
| Q |
118 |
gaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttc |
217 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
10878621 |
gaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttc |
10878720 |
T |
|
| Q |
218 |
aagtgaccttccggtaactctctccactgcttggttcctaat |
259 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10878721 |
aagtgaccttccggtaactctctccacggcttggttcctaat |
10878762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 10883592 - 10883833
Alignment:
| Q |
18 |
gaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
117 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||||||| |
|
|
| T |
10883592 |
gaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaag |
10883691 |
T |
|
| Q |
118 |
gaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttc |
217 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
10883692 |
gaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttccatcggtaaaccttc |
10883791 |
T |
|
| Q |
218 |
aagtgaccttccggtaactctctccactgcttggttcctaat |
259 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10883792 |
aagtgaccttccggtaactctctccacggcttggttcctaat |
10883833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 39676421 - 39676177
Alignment:
| Q |
16 |
cagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| || || |||||||| |
|
|
| T |
39676421 |
cagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaa |
39676322 |
T |
|
| Q |
116 |
aggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagacct |
215 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||| |
|
|
| T |
39676321 |
aggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattggtaaacct |
39676222 |
T |
|
| Q |
216 |
tcaagtgaccttccggtaactctctccactgcttggttcctaatc |
260 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
39676221 |
tcaagtgaccttccagtaactctctccacagcttggttcctaatc |
39676177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 10046475 - 10046240
Alignment:
| Q |
18 |
gaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
10046475 |
gaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtcgttgccatcggcaccgtgtactctttcccatcaagcaacaaag |
10046376 |
T |
|
| Q |
118 |
gaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagaccttc |
217 |
Q |
| |
|
| |||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| |||| ||| |
|
|
| T |
10046375 |
gtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttccattggtaaacccga |
10046276 |
T |
|
| Q |
218 |
aagtgaccttccggtaactctctccactgcttggtt |
253 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| |
|
|
| T |
10046275 |
gagtgactttccggtaactctctccaccgcttggtt |
10046240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 37948317 - 37948263
Alignment:
| Q |
16 |
cagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttc |
70 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || ||||| ||||||||||| ||||| |
|
|
| T |
37948317 |
cagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttc |
37948263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 30709487 - 30709688
Alignment:
| Q |
16 |
cagaaacataaatagctttacaacctctgttggtacttgcaaccaaacaaccttcggtggttgccatcggcaccgtgtactctttgccgtcaagcaacaa |
115 |
Q |
| |
|
||||||||| |||||||||||| ||||| || ||||||||||| | ||| ||||| ||||| ||||| ||||| |||||||| || || | ||||| |
|
|
| T |
30709487 |
cagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactcaactccatctaacaacag |
30709586 |
T |
|
| Q |
116 |
aggaccggcaacacccacggggatctgcacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttccatcggtagacct |
215 |
Q |
| |
|
||||| |||||||| || || || || |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||| |||| |
|
|
| T |
30709587 |
tggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcacaacactgtcccaatatcgaatcgtaatcaaaaccttccaacggtaaacct |
30709686 |
T |
|
| Q |
216 |
tc |
217 |
Q |
| |
|
|| |
|
|
| T |
30709687 |
tc |
30709688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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