View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_high_3 (Length: 662)
Name: NF17043_high_3
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 302 - 561
Target Start/End: Complemental strand, 51844413 - 51844154
Alignment:
| Q |
302 |
cttggaattgggtagccacaaacggaaacatgaaagttgtcatcgtgtgtgagaacagattggtgatggaggcttcaacttttagaattaccaatattgg |
401 |
Q |
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| T |
51844413 |
cttggaattgggtagccacaaacggaaacatgaaagttgtcatcgtgtgtgagaacagattggtgatggaggcttcaacttttagaattaccaatattgg |
51844314 |
T |
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| Q |
402 |
attttaattctaattatagttaaatttccaattggattgaattcattcagannnnnnngctatttttaacatcttctattcgttgaccggctaccttcat |
501 |
Q |
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| T |
51844313 |
attttaattctaattatagttaaatttacaattggattcaattcattcagatttttttgctatttttaacatcttctattcgttgaccggctaccttcat |
51844214 |
T |
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| Q |
502 |
ttcaggggttccattttatctttaccatcaatgcatggataatctataactgttccaaaa |
561 |
Q |
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| T |
51844213 |
ttcaggggttccattttatctttaccatcaatgcatggataatctataactgttccaaaa |
51844154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 51844587 - 51844506
Alignment:
| Q |
128 |
cgaacagcggccattggcaaccgggaatctgaaacgtcctccggttgtttgtagaaatggaccgctgttcggagagatagag |
209 |
Q |
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| T |
51844587 |
cgaacagcggccattggcaaccgggaatctgaaacgtcctccggttgtttgtagaaatggaccgctgttcggagagatagag |
51844506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 574 - 646
Target Start/End: Complemental strand, 51844056 - 51843984
Alignment:
| Q |
574 |
tccattattgtcaaaataattacttaatgttgccttcatttatccatagcttctttttatcaaaaattattac |
646 |
Q |
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| T |
51844056 |
tccattattgtcaaaataattacttaatgttgccttcatttatccatagcttctttttatcaaaaattattac |
51843984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 51844714 - 51844664
Alignment:
| Q |
1 |
aggaagccatgatgcaagagattgcgtgtttgtgaaggattgtttgagttt |
51 |
Q |
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| T |
51844714 |
aggaagccatgatgcaagagattgcgtgtttgtgaaggattgtttgagttt |
51844664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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