View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17043_high_33 (Length: 243)

Name: NF17043_high_33
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17043_high_33
NF17043_high_33
[»] chr8 (15 HSPs)
chr8 (1-227)||(4680314-4680533)
chr8 (1-99)||(4777495-4777593)
chr8 (1-97)||(4688071-4688167)
chr8 (6-225)||(4906008-4906224)
chr8 (1-102)||(4891299-4891400)
chr8 (1-97)||(4725335-4725431)
chr8 (1-225)||(4713783-4714005)
chr8 (1-97)||(4995367-4995463)
chr8 (1-97)||(10445821-10445917)
chr8 (1-99)||(4735805-4735903)
chr8 (1-38)||(4744870-4744907)
chr8 (1-97)||(4926185-4926281)
chr8 (3-37)||(21440515-21440549)
chr8 (65-101)||(4702563-4702599)
chr8 (1-37)||(4702627-4702663)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4680533 - 4680314
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctgatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4680533 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctgatat 4680434  T
Q  101 atgtaggaacatatatattaagataacttcaactagaataattattatttgtaacaaatatgtgacatatataaagcagctgtatacaaattcatttgac 200  Q
    ||||||||||    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4680433 atgtaggaac----atattaagataacttcaactagaata---attatttgtaacaaatatgtgacatatataaagcagctgtatacaaattcatttgac 4680341  T
Q  201 aaacctgattgatcctgagcttgtacc 227  Q
    |||||||||||||||||||||||||||    
T  4680340 aaacctgattgatcctgagcttgtacc 4680314  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4777495 - 4777593
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctgata 99  Q
    |||||||||||||||||||||||||| ||| | |||||  ||| |||||||||||| | | || ||||||||| |||||||||||||||||||||||||    
T  4777495 ctatgaatttggcatctgaaatgtaatttaggtctgtgtccgtatcagaatagctcaaatgttcaggtagaccacaatctatgctaatgaatcctgata 4777593  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4688167 - 4688071
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 97  Q
    |||||||||||||||||||||||||| |||||||||||  ||| ||||||||||| ||   || || |||||| |||||||||||||||||||||||    
T  4688167 ctatgaatttggcatctgaaatgtaatttatgcctgtgtccgtttcagaatagcttgaaagttcagatagaccacaatctatgctaatgaatcctga 4688071  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 225
Target Start/End: Original strand, 4906008 - 4906224
Alignment:
Q  6 aatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctg------ata 99  Q
    ||||||||||||||||||||| |||||||| ||||  | |||||||||||| | | || |||||||||||| |||| ||||||||||||||      |||    
T  4906008 aatttggcatctgaaatgtaatttatgcctctgcttatatcagaatagctcaaatgttcaggtagaccgcagtctaagctaatgaatcctgatacatata 4906107  T
Q  100 tatgtaggaacatatatattaagataacttcaactagaataattattatttgtaacaaatatgtgacatatataaagcagctgtatacaaattcatttga 199  Q
     || |||||||    | ||||||||||||||| ||| |||||| |||| | |||||||| |||||||    ||||||||||| || | ||||||  |       
T  4906108 aatttaggaac----aaattaagataacttcagctacaataataattactagtaacaaaaatgtgac----ataaagcagctatagaaaaattc-ctaat 4906198  T
Q  200 caaacctgattgatcctgagcttgta 225  Q
    ||||||||||||||||||||||||||    
T  4906199 caaacctgattgatcctgagcttgta 4906224  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 4891299 - 4891400
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctgatat 100  Q
    ||||||||||||||||||| |||||| ||||||||||  |||    ||||||| || | |||| ||||||||| ||||||| ||||||||||||||||||    
T  4891299 ctatgaatttggcatctgatatgtaatttatgcctgtcttcgatgaagaatagttcaaattttcaggtagaccacaatctaagctaatgaatcctgatat 4891398  T
Q  101 at 102  Q
    ||    
T  4891399 at 4891400  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4725431 - 4725335
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 97  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| | ||||||| ||   | || |||||| || |||||||||||||||||||||||    
T  4725431 ctatgaatttggcatctgaaatataatttatgcctgtggtcgtttgagaataggtcatatgttcaggtaggccacaatctatgctaatgaatcctga 4725335  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4714005 - 4713783
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgattt-ttgaggtagaccgcaatctatgctaatgaatcctgata 99  Q
    |||||||||||||||||||||| ||| |||||||||||  |  |  ||||||| | ||| | || |||||| || |||||||||||||||||||||||||    
T  4714005 ctatgaatttggcatctgaaatataatttatgcctgtgtccaacgaagaatagtt-gatatctttaggtaggccacaatctatgctaatgaatcctgata 4713907  T
Q  100 tatgtag---gaacatatatattaagataacttcaactagaataat-tattatttgtaacaaatatgtgacatatataaagcagctgtatacaaattcat 195  Q
     || ||    ||| | | | |||||| |||| ||||||| |||||| ||||| | ||||||||||||||||| |    |||||||| || ||||||||||    
T  4713906 catataaattgaaga-acaaattaaggtaacatcaactacaataatatattactagtaacaaatatgtgacaga----aagcagctatagacaaattcat 4713812  T
Q  196 ttgacaaacctgattgatcctgagcttgta 225  Q
       |||||||||||||||||||||||||||    
T  4713811 aa-acaaacctgattgatcctgagcttgta 4713783  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4995463 - 4995367
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 97  Q
    |||||||||||||||| ||||||||| |||||  ||||||  | |||||||| || || | || ||||||||| ||||||| |||||||||||||||    
T  4995463 ctatgaatttggcatcagaaatgtaatttatgtgtgtgcttatatcagaataccttgaatctttaggtagaccacaatctaagctaatgaatcctga 4995367  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10445917 - 10445821
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 97  Q
    |||||||||||| ||||||||||||| |||||  |||||||   | |  ||||||| | | |||||||||||| |||||||||||||||||||||||    
T  10445917 ctatgaatttggtatctgaaatgtaatttatgtatgtgctctcatgaatatagctcaaatgttgaggtagaccacaatctatgctaatgaatcctga 10445821  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 4735903 - 4735805
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctgata 99  Q
    |||||||||||||||||||||| ||| |||||||||||  |  | |||||||| |  | |    ||||||||| |||||||||||||||||||||||||    
T  4735903 ctatgaatttggcatctgaaatataatttatgcctgtgtccaacgcagaatagtttaaatgcgcaggtagaccacaatctatgctaatgaatcctgata 4735805  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4744907 - 4744870
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtg 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  4744907 ctatgaatttggcatctgaaatataacttatgcctgtg 4744870  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4926185 - 4926281
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgtgctcgtctcagaatagctcgatttttgaggtagaccgcaatctatgctaatgaatcctga 97  Q
    |||||||||  |||||||| |||||  ||||||||||| || ||||||  ||| | || |||| |||||| || ||||||||||| |||||||||||    
T  4926185 ctatgaattctgcatctgatatgtagtttatgcctgtgatcttctcagtgtagtttgaattttcaggtaggccacaatctatgctgatgaatcctga 4926281  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 21440515 - 21440549
Alignment:
Q  3 atgaatttggcatctgaaatgtaacttatgcctgt 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  21440515 atgaatttggcatctgaaatgtaatttatgcctgt 21440549  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 4702599 - 4702563
Alignment:
Q  65 aggtagaccgcaatctatgctaatgaatcctgatata 101  Q
    |||||||||||| |||| |||||||||||||||||||    
T  4702599 aggtagaccgcagtctaagctaatgaatcctgatata 4702563  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4702663 - 4702627
Alignment:
Q  1 ctatgaatttggcatctgaaatgtaacttatgcctgt 37  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  4702663 ctatgaatttggcctctgaaatgtaatttatgcctgt 4702627  T

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