View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17043_high_7 (Length: 558)

Name: NF17043_high_7
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17043_high_7
NF17043_high_7
[»] chr1 (5 HSPs)
chr1 (16-549)||(26304543-26305076)
chr1 (71-547)||(36532274-36532747)
chr1 (71-549)||(20627684-20628147)
chr1 (29-99)||(52076080-52076150)
chr1 (18-76)||(42460295-42460352)
[»] chr2 (2 HSPs)
chr2 (40-95)||(10127206-10127261)
chr2 (16-77)||(20529318-20529379)
[»] chr7 (4 HSPs)
chr7 (213-271)||(47089167-47089225)
chr7 (42-99)||(45377616-45377673)
chr7 (47-95)||(45378017-45378065)
chr7 (40-99)||(44137728-44137787)
[»] chr3 (1 HSPs)
chr3 (51-99)||(31092558-31092606)
[»] chr8 (2 HSPs)
chr8 (29-104)||(37233890-37233965)
chr8 (43-96)||(7891165-7891218)


Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 26304543 - 26305076
Alignment:
Q  16 agaacctatatagctcattcggtggaatacaaaacatgttctctccattattttgagttttctcaaagaggctagtaaatcctttcacctttcctaagta 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304543 agaacctatatagctcattcagtggaatacaaaacatgttctctccattattttgagttttctcaaagaggctagtaaatcctttcacctttcctaagta 26304642  T
Q  116 agctatttcaatgccaaaattttcagcaaaatctgatagaatttcaacaaaagcaaattcacgcttccgataattttctggattagaactccacttgata 215  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26304643 agctatttcaatgccaaaattttcagcaaaatctgataggatttcaacaaaagcaaattcacgcttccgataatattctggattagaactccacttgata 26304742  T
Q  216 tcccaatttctgaaaattgcccaagtttctcccttcttgggaaacactaggtaagagcctctgttatttccttttatgtactgaatctgatgagagaaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  26304743 tcccaatttctgaaaattgcccaagtttctcccttcttgggaaacactaggtaagagcctctgttatttcctttgatatactgaatctgatgagagaaaa 26304842  T
Q  316 tatcacgatctgtagttttctgagagttagcaattttgaatttaccacaagcaataggcaaatctgcattataccaatcaacctcgccatcctcatctgg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304843 tatcacgatctgtagttttctgagagttagcaattttgaatttaccacaagcaataggcaaatctgcattataccaatcaacctcgccatcctcatctgg 26304942  T
Q  416 gtaagcttccaaccaagtaatctgcaacttgaaagggaaggtcactttcttgacaagagcataaagtcttggcataacatcatcagtgttatcataaatt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304943 gtaagcttccaaccaagtaatctgcaacttgaaagggaaggtcactttcttgacaagagcataaagtcttggcataacatcatcagtgttatcataaatt 26305042  T
Q  516 gcccataattgattaacagcaaaacaatcatctg 549  Q
    ||||||||||||||||||||||||||||||||||    
T  26305043 gcccataattgattaacagcaaaacaatcatctg 26305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 71 - 547
Target Start/End: Complemental strand, 36532747 - 36532274
Alignment:
Q  71 agttttctcaaagaggctagtaaatcctttcacctttcctaagtaagctatttcaatgccaaaattttcagcaaaatctgatagaatttcaacaaaagca 170  Q
    ||||||||||||||||||||||||||| || || || ||||  ||||||| || |||||||| |||||||| | ||||||| || ||||| ||| |||||    
T  36532747 agttttctcaaagaggctagtaaatccctttactttgcctagataagctacttgaatgccaagattttcagtataatctgaaaggatttctacataagca 36532648  T
Q  171 aattcacgcttccgataattttctggattagaactccacttgatatcccaatttctgaaaattgcccaagtttctcccttcttgggaaacactaggtaag 270  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  36532647 aattcacgcttcagataattttctggattagaactccaattgatatcccaatttctgaaaatcgcccaggtttctcccttcttgggaagcactaggtaag 36532548  T
Q  271 agcctctgttatttccttttatgtactgaatctgatgagagaaaatatcacgatctgtagttttctgagagttagcaattttgaatttaccacaagcaat 370  Q
    |  || | | ||||||||||||  |||| ||||| |||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  36532547 aatctttctcatttccttttataaactgtatctggtgagagaacataccacgatctgtagttttctgagagttagcaagtttgaacttgccacaagcaat 36532448  T
Q  371 aggcaaatctgcattataccaatcaacctcgccatcctcatctgggtaagcttccaaccaagtaatctgcaacttgaaagggaaggtcactttcttgaca 470  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36532447 aggcaaatctgcattataccaatgaacctcgctatcttcatctgggtcagcttccaaccaagtaatctgcaacttgaaagggaaggtcactttcttgaca 36532348  T
Q  471 agagcataaagtcttggcataacatcatcagtgttatcataaattgcccataattgattaacagcaaaacaatcatc 547  Q
    |||||||||| |||||||||   | |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  36532347 agagcataaaatcttggcat---agcatcggtggtatcataaattgcccataattgattaacagcaaaacaatcatc 36532274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 71 - 549
Target Start/End: Original strand, 20627684 - 20628147
Alignment:
Q  71 agttttctcaaagaggctagtaaatcctttcacctttcctaagtaagctatttcaatgccaaaattttcagcaaaatctgatagaatttcaacaaaagca 170  Q
    ||||||||||||||||||| |||| ||| | || || |||| |||||||| || ||  |||| ||||||||||||||||||||| ||||||||| |||||    
T  20627684 agttttctcaaagaggctaataaaccctctaactttgcctaggtaagctacttgaacaccaacattttcagcaaaatctgataggatttcaacataagca 20627783  T
Q  171 aattcacgcttccgataattttctggattagaactccacttgatatcccaatttctgaaaattgcccaagtttctcccttcttgggaaacactaggtaag 270  Q
    ||||||||||||||  ||||||||||||||||||||||            |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  20627784 aattcacgcttccggaaattttctggattagaactcca------------atttgtgaaaattgcccaagtttctcccttcttgggaaacactagataag 20627871  T
Q  271 agcctctgttatttccttttatgtactgaatctgatgagagaaaatatcacgatctgtagttttctgagagttagcaattttgaatttaccacaagcaat 370  Q
    ||||| ||  | ||||||||||  || |||||||||||||||| ||| ||||| |||||||||||||||| ||| ||| ||| |||||||||||||||||    
T  20627872 agcctttgccacttccttttatacacagaatctgatgagagaacataccacgagctgtagttttctgagatttaccaagtttaaatttaccacaagcaat 20627971  T
Q  371 aggcaaatctgcattataccaatcaacctcgccatcctcatctgggtaagcttccaaccaagtaatctgcaacttgaaagggaaggtcactttcttgaca 470  Q
    ||||||| ||||||||||| ||| ||| || | |||||  |||||||  ||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  20627972 aggcaaacctgcattatacgaatgaacgtcactatccttgtctgggtcggcttccaaccaagtaatatgcatcttgaaagggaaggttactttcttgaca 20628071  T
Q  471 agagcataaagtcttggcataacatcatcagtgttatcataaattgcccataattgattaacagcaaaacaatcatctg 549  Q
    |||||||||| |||||||||   | |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  20628072 agagcataaaatcttggcat---agcatcagtggtatcataaactgcccaaaattgattaacagcaaaacaatcatctg 20628147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 52076150 - 52076080
Alignment:
Q  29 ctcattcggtggaatacaaaacatgttctctccattattttgagttttctcaaagaggctagtaaatcctt 99  Q
    |||||| ||| ||||||||||||||||||||| ||| ||||||||||||| |||||| ||||| |||||||    
T  52076150 ctcattaggtagaatacaaaacatgttctctcaattcttttgagttttctaaaagagactagtgaatcctt 52076080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 42460352 - 42460295
Alignment:
Q  18 aacctatatagctcattcggtggaatacaaaacatgttctctccattattttgagtttt 76  Q
    ||||||||||||||| | ||||||||| |||| ||||||||| |||| |||||||||||    
T  42460352 aacctatatagctcactaggtggaatataaaatatgttctcttcatt-ttttgagtttt 42460295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 10127206 - 10127261
Alignment:
Q  40 gaatacaaaacatgttctctccattattttgagttttctcaaagaggctagtaaat 95  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  10127206 gaatacaaaacatgttttctccattcttttgagttttctcaaagagactagtaaat 10127261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 20529379 - 20529318
Alignment:
Q  16 agaacctatatagctcattcggtggaatacaaaacatgttctctccattattttgagttttc 77  Q
    ||||||||||||| | ||||||| ||||||||||  |||||||| |||||||||||||||||    
T  20529379 agaacctatatagttgattcggtagaatacaaaatgtgttctctacattattttgagttttc 20529318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 47089167 - 47089225
Alignment:
Q  213 atatcccaatttctgaaaattgcccaagtttctcccttcttgggaaacactaggtaaga 271  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||| | ||||| |||||    
T  47089167 atatcccaatgtctgaaaattgcccaagtttcacccttcatgggatatactagataaga 47089225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 45377673 - 45377616
Alignment:
Q  42 atacaaaacatgttctctccattattttgagttttctcaaagaggctagtaaatcctt 99  Q
    |||||||||||||||| |||||| ||||||||||||||||| || | | |||||||||    
T  45377673 atacaaaacatgttctatccattcttttgagttttctcaaaaagacaaataaatcctt 45377616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 45378017 - 45378065
Alignment:
Q  47 aaacatgttctctccattattttgagttttctcaaagaggctagtaaat 95  Q
    |||||||||||||||||| |||||| |||||| |||||| |||||||||    
T  45378017 aaacatgttctctccatttttttgaattttcttaaagagactagtaaat 45378065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 44137787 - 44137728
Alignment:
Q  40 gaatacaaaacatgttctctccattattttgagttttctcaaagaggctagtaaatcctt 99  Q
    ||||||||||||  ||||||||||| |||||| ||||||||||||  ||||||| |||||    
T  44137787 gaatacaaaacactttctctccattcttttgatttttctcaaagaaactagtaattcctt 44137728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 31092606 - 31092558
Alignment:
Q  51 atgttctctccattattttgagttttctcaaagaggctagtaaatcctt 99  Q
    |||||||||||||| |||||||||||||||||| | || ||||||||||    
T  31092606 atgttctctccattcttttgagttttctcaaagtgactggtaaatcctt 31092558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 37233965 - 37233890
Alignment:
Q  29 ctcattcggtggaatacaaaacatgttctctccattattttgagttttctcaaagaggctagtaaatcctttcacc 104  Q
    |||||| ||| ||||  |||| ||||| |||||||| |||||||||| |||||| || ||| ||||||||||||||    
T  37233965 ctcattgggtagaatgtaaaatatgttttctccattcttttgagtttactcaaatagactaataaatcctttcacc 37233890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 7891218 - 7891165
Alignment:
Q  43 tacaaaacatgttctctccattattttgagttttctcaaagaggctagtaaatc 96  Q
    ||||||||||||| || | ||| |||||||||||||||||||  ||||||||||    
T  7891218 tacaaaacatgttatccctattcttttgagttttctcaaagaaactagtaaatc 7891165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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