View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_high_9 (Length: 526)
Name: NF17043_high_9
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 13 - 512
Target Start/End: Complemental strand, 5354438 - 5353939
Alignment:
| Q |
13 |
aatataaatataatgcaacaaatgaaggatttcttgctaatatagctttcaggttgaccnnnnnnnngtatggttcatagttattgattttgaagttgtt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
5354438 |
aatataaatataatgcaacaaatgaaggatttcttgctaatatagctttcaggttgaccttttttttgtatggctcatagttattgattttgaagttgtt |
5354339 |
T |
|
| Q |
113 |
gagtatggcctatagttattgttgagtatggcttactattaatgtaagttgtacactataactttaatttttcaccgataatacaaaggaactacagctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5354338 |
gagtatggcctatagttattgttgagtatggcttactattaatgtaagttgtacactataactttaatttttcaccgataatacaaaggaactacagctg |
5354239 |
T |
|
| Q |
213 |
ctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtttaactgtttattgtttgcatttattatttctttactcttct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5354238 |
ctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtttaactgtttattgtttgcatttattatttctttactcttct |
5354139 |
T |
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| Q |
313 |
gaacaggcttctgttctatcagaagtaactataattttctttcctagaagttgtttttaaatcaatatatttcatgaaaatttgtgattttgatacaggt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5354138 |
gaacaggcttctgttctatcagaagtaactataattttctttcctagaagttgtttttaaatcaatatatttcatgaaaatttgtgattttgatacaggt |
5354039 |
T |
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| Q |
413 |
gcactttcatggatttgtggaggagaagtaaacttgtcttctttttgtgttcaaagatgcataatagatggagtgaacattatcttttcctgtgttttct |
512 |
Q |
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| T |
5354038 |
gcactttcatggatttgtggaggagaagtaaacttgtcttctttttgtgttcaaagatgcataatagatggagtgaacattatcttttcctgtgttttct |
5353939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 5508996 - 5508954
Alignment:
| Q |
229 |
gtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
271 |
Q |
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| T |
5508996 |
gtaggcaaaattggctgaatttcgttaccaagcattgtgtgtt |
5508954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 6788048 - 6788145
Alignment:
| Q |
176 |
ttaatttttcaccgataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgttta |
273 |
Q |
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| T |
6788048 |
ttaatctttcactcataataaaaaggaactgcagcttctctgcagtcggagatgtaggcaatattggccgaacttcgttaccaaacatcgtgtgttta |
6788145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 8467115 - 8467036
Alignment:
| Q |
189 |
gataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgt |
268 |
Q |
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| T |
8467115 |
gataatacaaaggaactgcagcttctctacagtcggagacgtaggcaatattggccgaacttcgttaccaaacattgtgt |
8467036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 6939486 - 6939405
Alignment:
| Q |
190 |
ataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
271 |
Q |
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|||||| ||||||||| |||||||| || |||| |||| |||||||| |||||| ||||||||||||||||||| ||||||| |
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| T |
6939486 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgtt |
6939405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 6942661 - 6942580
Alignment:
| Q |
190 |
ataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
271 |
Q |
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|||||| ||||||||| |||||||| || |||| |||| |||||||| |||||| ||||||||||||||||||| ||||||| |
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|
| T |
6942661 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgtt |
6942580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 28362647 - 28362730
Alignment:
| Q |
188 |
cgataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
271 |
Q |
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|||||||||||||||||| |||||||| || |||| |||| ||||||||||||| ||||| |||||||||||| ||||||| |
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| T |
28362647 |
cgataatacaaaggaactgcagctgctctgcagtctgagacataggcaaaattggttaaactttgttaccaaacatcgtgtgtt |
28362730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 1569744 - 1569823
Alignment:
| Q |
189 |
gataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgt |
268 |
Q |
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||||||||||| ||||| ||| | ||||| |||| |||| ||||||||||||| | |||||||||| ||| ||||||||| |
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| T |
1569744 |
gataatacaaatgaactgcagttcctttgcagtcggagacgtaggcaaaattgtctgaacttcgtttccagacattgtgt |
1569823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 34564829 - 34564911
Alignment:
| Q |
190 |
ataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgttt |
272 |
Q |
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|||||| |||||| ||||| | ||| | |||| |||| ||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
34564829 |
ataatagaaaggacctacaccagctctacagtcggagacgtaggcaaatttggccgaacttcgttaccaaacatcgtgtgttt |
34564911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 30526250 - 30526194
Alignment:
| Q |
224 |
gagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtttaactgttt |
280 |
Q |
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|||| ||||||| |||||| | |||||||||||||||||| ||||||||| |||||| |
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|
| T |
30526250 |
gagacgtaggcacaattggtcaaacttcgttaccaaacatcgtgtgtttatctgttt |
30526194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 33720167 - 33720252
Alignment:
| Q |
182 |
tttcaccgataatacaaaggaactacagctgctt----tgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacat |
263 |
Q |
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| T |
33720167 |
tttcacagataatagaaaggaactgcagctgctcgctctgcagtcggagatgtaggcaaaattggccgaacttcgttatcaaacat |
33720252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 15105206 - 15105286
Alignment:
| Q |
191 |
taatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
271 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||| |||| ||| || | ||||| |||||||||||||| |||||||||| |
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|
| T |
15105206 |
taatagaaaggaactgcagctgctttatagtcggagatatagacatatctggccaaacttcgttaccaactattgtgtgtt |
15105286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 1782763 - 1782815
Alignment:
| Q |
219 |
agtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt |
271 |
Q |
| |
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|||| |||| || ||||||||||||| |||||| |||||||||||||| |||| |
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| T |
1782763 |
agtcggagaggttggcaaaattggccaaacttcattaccaaacattgtatgtt |
1782815 |
T |
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