View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_low_10 (Length: 462)
Name: NF17043_low_10
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_low_10 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 448
Target Start/End: Complemental strand, 42987009 - 42986569
Alignment:
| Q |
7 |
tcgaagaatattcgaaaattttaaaataagagttcctgaatggaaaccgctatatatgttatagttgcacaaaagtaggacagagtgggaagtaaggaag |
106 |
Q |
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| T |
42987009 |
tcgaaaaatattggaaaatttaaaaataagagttcctgaatggaaaccg-tatatatgttatagttgcacaaaagtaggacaaagtgggaagtaaggaag |
42986911 |
T |
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| Q |
107 |
aaagcataaatccaaccgtttcaaacaaagaaaacaaaaatggctgaagcaaatatcaacattaaatccaggaacgccaagtgttgctactctgcgtttc |
206 |
Q |
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| T |
42986910 |
aaagcataaatccaaccgtttcaaacaaagaaaacaaaaatggctgaagcaaatatcaacattaaatccaggaacgccaagtgttgctactctgcgtttc |
42986811 |
T |
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| Q |
207 |
ataatgtcactgccatggttggagctgcagttcttggcttcccctatgctatgtctcagcttggatggttagcattttttctactcaagtttttaatctt |
306 |
Q |
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| T |
42986810 |
ataatgtcactgccatggttggagctgcagttcttggcttcccctatgctatgtctcagcttggatggttagcattttttctactcaagtttttaatctt |
42986711 |
T |
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| Q |
307 |
cccatttcattcatcaacatttgaaaatatagatatattctatgtagcaccggcatttatgataaaaagaatcttcggtgtctgacatgtattggtgtgt |
406 |
Q |
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| T |
42986710 |
cccatttcattcatcaacatttgaaaatatagatatattctatgtagcaccggcatttctgataaaaagaatcttcggtgtctgacatgtattggtgtgt |
42986611 |
T |
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| Q |
407 |
gacaccactggtacgacacgacatatgttgtacatgtctatg |
448 |
Q |
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| T |
42986610 |
gacaccactggtacgacacgacatatgttgtacatgtctatg |
42986569 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 7980079 - 7980030
Alignment:
| Q |
194 |
tactctgcgtttcataatgtcactgccatggttggagctgcagttcttgg |
243 |
Q |
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| T |
7980079 |
tactcagcttttcacaatgtcactgccatggttggagctggtgttcttgg |
7980030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 4012 - 3968
Alignment:
| Q |
209 |
aatgtcactgccatggttggagctgcagttcttggcttcccctat |
253 |
Q |
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| T |
4012 |
aatgtcactgcaatggttggagctggtgttcttggcctcccctat |
3968 |
T |
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