View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_low_13 (Length: 428)
Name: NF17043_low_13
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 33594082 - 33594399
Alignment:
| Q |
1 |
cttgttatcccttttctatggtgttttccacatacaaaattatagtgtatatatgatatgacatgatatta--tttttgttactgttatctannnnnnna |
98 |
Q |
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| T |
33594082 |
cttgttatcccttttctatggtgttttccacatacaaaattatagtgtatatatgatatgacatgatatttattttttgttactgttatctattttttta |
33594181 |
T |
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| Q |
99 |
gcaagttactgttatcttatttgtatgtacatgtggaggaaaataatttgcttcatttaagatttgtatatgatctaagacatgtactatttttatttga |
198 |
Q |
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| T |
33594182 |
gcaagttactgttatcttatttgtatgtacatgtggaggaaaataatttgcttcatttaagatttgtat--gatctgagacttgtactatttttatttga |
33594279 |
T |
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| Q |
199 |
ttgatgatgatagaaggggtgtagatttaaggcatgggaatgtgaatgattggatatgaaattaatggaaattttgaaacagctctggtgacttgatggg |
298 |
Q |
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| T |
33594280 |
ttgatgat---agtaggggtgtcgatttaaggcatgggaatgtgaatgattggatatgaaattaatggaaattgtgaaacagctctggtgacttgatggg |
33594376 |
T |
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| Q |
299 |
tcttaatttcttcatcctcatgt |
321 |
Q |
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|||||||||||||||| |||||| |
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| T |
33594377 |
tcttaatttcttcatcatcatgt |
33594399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 319 - 426
Target Start/End: Original strand, 33596525 - 33596632
Alignment:
| Q |
319 |
tgtggactaccttatgccaacaccaatttatctgtaattccatcggttgtgggatattattgaatctttgctatattactctacatgtggatgaaagtga |
418 |
Q |
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| T |
33596525 |
tgtggactaccttatgccaacaccaatttatctgtaattccatcggttgtgggatattattgaatttttgctatattactctacatgtggatgaaagtga |
33596624 |
T |
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| Q |
419 |
tgatgtcc |
426 |
Q |
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|||||||| |
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| T |
33596625 |
tgatgtcc |
33596632 |
T |
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