View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17043_low_14 (Length: 428)

Name: NF17043_low_14
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17043_low_14
NF17043_low_14
[»] chr5 (27 HSPs)
chr5 (10-409)||(36123377-36123776)
chr5 (12-207)||(21952257-21952452)
chr5 (15-91)||(42199301-42199378)
chr5 (29-99)||(33667223-33667294)
chr5 (101-202)||(2075746-2075845)
chr5 (38-99)||(31636133-31636195)
chr5 (23-99)||(10082937-10083014)
chr5 (15-99)||(14749314-14749399)
chr5 (23-99)||(37065536-37065613)
chr5 (15-83)||(2712968-2713036)
chr5 (120-191)||(32516480-32516551)
chr5 (38-99)||(1525651-1525713)
chr5 (121-207)||(21093682-21093768)
chr5 (120-202)||(24178421-24178503)
chr5 (39-91)||(11002637-11002690)
chr5 (114-202)||(1287872-1287960)
chr5 (23-75)||(9235096-9235148)
chr5 (12-97)||(22576053-22576139)
chr5 (120-202)||(28977146-28977228)
chr5 (114-183)||(5305546-5305615)
chr5 (160-209)||(5848405-5848454)
chr5 (15-191)||(7678402-7678575)
chr5 (120-209)||(16454615-16454703)
chr5 (46-83)||(21193861-21193898)
chr5 (39-98)||(15489706-15489766)
chr5 (29-99)||(18351111-18351183)
chr5 (120-200)||(34194785-34194865)
[»] chr7 (24 HSPs)
chr7 (23-207)||(36514405-36514581)
chr7 (24-198)||(14593676-14593848)
chr7 (38-209)||(40830132-40830292)
chr7 (24-198)||(16013199-16013371)
chr7 (29-211)||(19262637-19262811)
chr7 (15-188)||(43282330-43282500)
chr7 (34-99)||(7220751-7220817)
chr7 (15-207)||(39811863-39812049)
chr7 (27-99)||(28858051-28858124)
chr7 (155-199)||(24550011-24550055)
chr7 (23-202)||(5335833-5336004)
chr7 (147-202)||(12841591-12841646)
chr7 (120-197)||(40008706-40008783)
chr7 (23-99)||(45558369-45558446)
chr7 (114-202)||(36869572-36869660)
chr7 (15-82)||(6420680-6420747)
chr7 (38-100)||(30200176-30200239)
chr7 (160-207)||(30200288-30200335)
chr7 (48-98)||(30914691-30914742)
chr7 (38-205)||(33072862-33073021)
chr7 (155-202)||(42187382-42187429)
chr7 (120-202)||(33350095-33350177)
chr7 (155-207)||(25579395-25579447)
chr7 (15-87)||(35713715-35713787)
[»] chr6 (8 HSPs)
chr6 (38-207)||(33083964-33084127)
chr6 (120-207)||(33998293-33998380)
chr6 (101-197)||(32755835-32755931)
chr6 (160-207)||(2079239-2079286)
chr6 (122-183)||(9568590-9568651)
chr6 (158-202)||(6293696-6293740)
chr6 (120-202)||(28085287-28085369)
chr6 (23-91)||(9593904-9593973)
[»] chr8 (12 HSPs)
chr8 (38-202)||(36545058-36545218)
chr8 (12-181)||(32043522-32043685)
chr8 (101-209)||(39051047-39051152)
chr8 (101-207)||(40813228-40813334)
chr8 (26-99)||(9695638-9695712)
chr8 (38-99)||(2776442-2776504)
chr8 (165-207)||(35601904-35601946)
chr8 (121-190)||(7103185-7103254)
chr8 (147-200)||(39953580-39953633)
chr8 (165-197)||(39760758-39760790)
chr8 (160-196)||(41444625-41444661)
chr8 (15-67)||(41971968-41972020)
[»] chr3 (16 HSPs)
chr3 (16-133)||(29374911-29375025)
chr3 (38-202)||(33272235-33272399)
chr3 (114-202)||(46568027-46568115)
chr3 (38-207)||(49841517-49841688)
chr3 (15-91)||(21200563-21200640)
chr3 (38-99)||(3987054-3987116)
chr3 (38-202)||(52138711-52138869)
chr3 (168-202)||(27917483-27917517)
chr3 (38-99)||(49503767-49503829)
chr3 (38-99)||(50960846-50960908)
chr3 (54-99)||(1290067-1290112)
chr3 (38-83)||(11581468-11581513)
chr3 (120-209)||(25191283-25191372)
chr3 (24-100)||(39535639-39535716)
chr3 (155-207)||(42510335-42510387)
chr3 (150-207)||(46367702-46367761)
[»] chr2 (18 HSPs)
chr2 (38-201)||(4598775-4598934)
chr2 (120-191)||(9578990-9579061)
chr2 (101-207)||(7825264-7825370)
chr2 (120-202)||(8180691-8180773)
chr2 (165-207)||(36039129-36039171)
chr2 (24-97)||(44437920-44437994)
chr2 (23-183)||(9556567-9556720)
chr2 (15-83)||(13240935-13241003)
chr2 (147-202)||(24583922-24583977)
chr2 (165-207)||(1456139-1456181)
chr2 (120-202)||(36183362-36183444)
chr2 (15-68)||(3481180-3481233)
chr2 (38-87)||(41779521-41779570)
chr2 (134-207)||(45077654-45077727)
chr2 (123-207)||(23714550-23714634)
chr2 (123-207)||(24102222-24102306)
chr2 (155-191)||(41330059-41330095)
chr2 (23-79)||(42543263-42543319)
[»] chr1 (23 HSPs)
chr1 (15-207)||(26016343-26016529)
chr1 (15-207)||(40419545-40419731)
chr1 (38-202)||(9509229-9509387)
chr1 (23-82)||(29807891-29807950)
chr1 (106-207)||(52442781-52442880)
chr1 (120-209)||(8391676-8391765)
chr1 (101-202)||(22090005-22090106)
chr1 (101-202)||(43240651-43240752)
chr1 (167-207)||(1661332-1661372)
chr1 (113-201)||(4379917-4380005)
chr1 (155-202)||(9599718-9599765)
chr1 (38-207)||(18793201-18793364)
chr1 (120-202)||(9592645-9592727)
chr1 (120-202)||(30202419-30202501)
chr1 (23-143)||(43423689-43423803)
chr1 (27-99)||(3819058-3819131)
chr1 (23-68)||(10569265-10569310)
chr1 (38-83)||(16822235-16822280)
chr1 (15-99)||(27637823-27637908)
chr1 (15-99)||(38868889-38868974)
chr1 (38-197)||(51440978-51441131)
chr1 (41-90)||(52160452-52160501)
chr1 (15-67)||(19908229-19908281)
[»] chr4 (34 HSPs)
chr4 (38-202)||(436140-436298)
chr4 (23-99)||(35555845-35555922)
chr4 (23-183)||(41192764-41192920)
chr4 (15-99)||(46715562-46715647)
chr4 (120-200)||(25257868-25257948)
chr4 (38-202)||(44359995-44360155)
chr4 (120-207)||(27991704-27991791)
chr4 (23-207)||(33709825-33710008)
chr4 (23-96)||(42285898-42285972)
chr4 (123-204)||(49987337-49987418)
chr4 (61-207)||(10775658-10775798)
chr4 (123-209)||(40933188-40933274)
chr4 (38-99)||(49738817-49738879)
chr4 (15-68)||(21214770-21214823)
chr4 (17-98)||(31339545-31339626)
chr4 (15-99)||(54470214-54470299)
chr4 (23-83)||(2589014-2589074)
chr4 (155-207)||(11389626-11389678)
chr4 (167-207)||(30853322-30853362)
chr4 (15-79)||(51550438-51550502)
chr4 (119-202)||(43070052-43070135)
chr4 (120-202)||(12494661-12494743)
chr4 (23-207)||(17900386-17900564)
chr4 (132-202)||(18499784-18499854)
chr4 (120-202)||(33227120-33227202)
chr4 (133-207)||(45094464-45094538)
chr4 (120-190)||(51841480-51841550)
chr4 (15-68)||(28497528-28497581)
chr4 (23-91)||(31897626-31897695)
chr4 (15-99)||(42293439-42293524)
chr4 (15-91)||(51252651-51252728)
chr4 (135-191)||(31452402-31452458)
chr4 (15-67)||(32339611-32339663)
chr4 (155-207)||(44860760-44860812)
[»] scaffold0325 (1 HSPs)
scaffold0325 (39-99)||(11805-11866)
[»] scaffold0157 (1 HSPs)
scaffold0157 (120-202)||(25734-25816)


Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Original strand, 36123377 - 36123776
Alignment:
Q  10 attattctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccatttttctacaataggtgtggtgttacc 109  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36123377 attattctccttgctacaaaatcaacacgtcttctctctacatgcccaaatcacctaagtcgagtttctaccatttttctacaataggtgtggtgttacc 36123476  T
Q  110 ccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattttact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36123477 ccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattttact 36123576  T
Q  210 agcaaaaatgaaagacttatacaagttaatgataacctagttagtaaatagatcttaataaaactttaccaattaaattcacaattctcatactacaaat 309  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36123577 agcaaaaatgaaagacttgtacaagttaatgataacctagttagtaaatagatcttaataaaactttaccaattaaattcacaattctcatactacaaat 36123676  T
Q  310 cataacataactnnnnnnnnnnnncccaatacccaattctaataatatcaacatattcatctcataaaacagttaaataaaagaaaaacaccctcgtaca 409  Q
    ||||||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36123677 cataacataactaaaaaataaaaacccaatacccaattctaataatagcaacatattcatctcataaaacagctaaataaaagaaaaacaccctcgtaca 36123776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 21952452 - 21952257
Alignment:
Q  12 tattctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccc 110  Q
    |||||||||| ||| |||||| ||| | ||||| |||||||| ||||| ||||| |||| ||||||| |||| |||||||| ||||||||| ||||||||    
T  21952452 tattctccttactatagaatccacaggacttctctctacatgtccaaaccacctgagtctagtttctgccatcttttctactataggtgtg-tgttaccc 21952354  T
Q  111 caactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||| ||| |||| ||||  |||||||| ||||   |||  || |||| |||| |||||| |||| ||||||| |||||| | |||| |||| ||||    
T  21952353 caaccctctctctttaatgctgtcatttctaatcttatctcgtctagtcttaccacacatgcaacgcaacatcctcatcttttctacacttaattta 21952257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 42199378 - 42199301
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctac 91  Q
    ||||||| |||||||||| ||| ||||||| |||||||||||||| |||||||||| |||||| ||||| ||||||||    
T  42199378 tctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctac 42199301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 33667294 - 33667223
Alignment:
Q  29 aatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||| ||| ||||||| |||||||||||||| |||||||||| |||||||||||| |||||||| |||||||    
T  33667294 aatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtg 33667223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 2075746 - 2075845
Alignment:
Q  101 ggtgttaccccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    ||||||||||| ||||||  |||||||| ||||||||  |||| | ||| ||| |||| ||||||| |||||||| ||||||| ||||||||||||| ||    
T  2075746 ggtgttacccccactctc--tctctaatgttgtcattcctaatcctatcttgtctagtcttacaactcatccaacgcaacatcctcatctctgctacact 2075843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 31636133 - 31636195
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||| |||||||| |||||||    
T  31636133 gtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtg 31636195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 10082937 - 10083014
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||||||||| ||| ||||||| |||||||||| ||| ||| |||||| |||||||||||| |||||||| |||||||    
T  10082937 ctacagaatccacaagtcttctctctacatgccgaaaccacttaagtctagtttctaccatcttttctactataggtg 10083014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 14749399 - 14749314
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctacc-atttttctacaataggtg 99  Q
    ||||||| | |||||||| ||| ||||||| |||||||| ||||| || ||||||| |||||||||| |||||||||| |||||||    
T  14749399 tctccttacaacagaatccacaggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggtg 14749314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 37065613 - 37065536
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||||||||| |||  |||||| ||||||||||||||| ||| ||||| |||||||||||| |||||||| |||||||    
T  37065613 ctacagaatccacatttcttctctctacatgcccaaatgacccaagtctagtttctaccatcttttctactataggtg 37065536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 2713036 - 2712968
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat 83  Q
    |||||||  ||||||||| ||| ||||||| |||||||||||||| |||||||||| ||| ||||||||    
T  2713036 tctccttcatacagaatccacaggtcttctctctacatgcccaaaccacctaagtctagtctctaccat 2712968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 32516551 - 32516480
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctc 191  Q
    ||||||||| ||||||||| ||| || ||| ||| |||| |||| ||||||||||||||||||| |||||||    
T  32516551 ctctctaatgttgtcatttctaagtctatcctgtctagtcttaccacacatccaacacaacatcatcatctc 32516480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 1525713 - 1525651
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| |||||||| ||||  |||||||||| |||||||||||| ||||||||||||||||    
T  1525713 gtcttctctctacatgtccaagccacctaagtctagtttctaccatcttttctacaataggtg 1525651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 21093768 - 21093682
Alignment:
Q  121 tctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||||||||||||||||| |||||||||||  | |||| |||| |||||| |||| ||||||| |||| ||  |||| |||||||||    
T  21093768 tctctaatattgtcatttctaattccatcacatctagtcttaccacacatacaacgcaacatcctcatatccactacacttatttta 21093682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 24178503 - 24178421
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  ||||||| ||||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  24178503 ctctctaatggtgtcattcttaatcctatcatgtatagtcttaccactcatccaacgcaacatcctcatctctgctacactta 24178421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 11002637 - 11002690
Alignment:
Q  39 tcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctac 91  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||| ||||||||    
T  11002637 tcttctacctacatgcccaaaccacctaagtctagtttctaccatgttttctac 11002690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 1287872 - 1287960
Alignment:
Q  114 ctctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    ||||| |||||||||  |||||||  |||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  1287872 ctctctctctctaatgatgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacactta 1287960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 9235148 - 9235096
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtt 75  Q
    |||||||||| ||| ||||||| ||||||||| |||| |||||||||||||||    
T  9235148 ctacagaatctacaagtcttctctctacatgctcaaaacacctaagtcgagtt 9235096  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 22576139 - 22576053
Alignment:
Q  12 tattctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaatagg 97  Q
    |||||||||||||||| |||| ||| ||||| | |  ||||| | ||| |||| |||||||||||| ||||| ||||||||||||||    
T  22576139 tattctccttgctacaaaatctacatgtcttgtctacacatgacaaaaccacccaagtcgagtttccaccatcttttctacaatagg 22576053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 28977146 - 28977228
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  |||||||  |||| | ||||| | ||||||||| || |||||||||||||||  ||||||||||||| ||||    
T  28977146 ctctctaatggtgtcattcctaatcctatcatttctagttttaccactcatccaacacaacatactcatctctgctacactta 28977228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 5305615 - 5305546
Alignment:
Q  114 ctctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatc 183  Q
    ||||| ||||||||| |||| |||| |||||| ||| ||| |||| |||| ||||||||||| |||||||    
T  5305615 ctctctctctctaatgttgttatttctaattctatcttgtctagtcttaccacacatccaacgcaacatc 5305546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 5848405 - 5848454
Alignment:
Q  160 ttacaacacatccaacacaacatcttcatctctgctacgcttattttact 209  Q
    |||| ||||||||||  ||||||| ||||||||||||| |||||||||||    
T  5848405 ttaccacacatccaatgcaacatcctcatctctgctacacttattttact 5848454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 7678575 - 7678402
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccatttttctacaataggtgtggtgttaccccaac 114  Q
    ||||||| |||||||||| ||| ||||| | |||||| |||||||  ||||||| ||  |||| ||||||||||||| ||||||    || || ||||||    
T  7678575 tctccttactacagaatctacatgtcttttctctacaagcccaaacaacctaagccg--tttccaccatttttctactataggt----tgctatcccaac 7678482  T
Q  115 tctcact---ctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctc 191  Q
    |||| ||   ||||||| ||||||||| |||| | ||| | | |||| || | ||| ||||||| ||||||| |||||||    
T  7678481 tctctctcccctctaatgttgtcatttctaatcctatcctatctagtcttgccacagatccaacgcaacatcctcatctc 7678402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 16454703 - 16454615
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattttact 209  Q
    ||||||| |||| |||||| || ||| ||||||| ||||||||| | ||||||||  || |||| ||||||||||||| |||| ||||||    
T  16454703 ctctctattattctcatttcta-ttctatcatgtctagttttaccaaacatccaatgcatcatcctcatctctgctacacttactttact 16454615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 21193861 - 21193898
Alignment:
Q  46 tctacatgcccaaatcacctaagtcgagtttctaccat 83  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  21193861 tctacatgcccaaatcacctaagtctagtttccaccat 21193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 15489706 - 15489766
Alignment:
Q  39 tcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggt 98  Q
    |||||| |||||||||||||| || |||||  ||||||| ||||| |||||||||||||||    
T  15489706 tcttctctctacatgcccaaaccatctaagctgagtttcaaccatcttttctacaataggt 15489766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 18351111 - 18351183
Alignment:
Q  29 aatcaacacgtcttctatctaca-tgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||| ||| ||||||| |||||| |||||||| |||||||| | |||||||||||| |||||||| |||||||    
T  18351111 aatctacaggtcttctctctacaatgcccaaaccacctaagcctagtttctaccatattttctactataggtg 18351183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 34194785 - 34194865
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    ||||||||| ||  ||||| |||| | ||| ||| ||||||||| ||||||||||||||||||| |  ||||| |||||||    
T  34194785 ctctctaatgtttacatttctaatcctatcctgtctagttttaccacacatccaacacaacatcctattctctactacgct 34194865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 36514405 - 36514581
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcact 121  Q
    |||||||||| ||| ||| ||| |||||||||||||| |||||||||| |||||||||||| |||||||| |||     |||| ||||||||||    ||    
T  36514405 ctacagaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactata-----ggtgctaccccaact----ct 36514495  T
Q  122 ctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||| ||||| ||| |||||| |||  ||||||| |||| ||||||||||| ||||||| ||||||||||||| |||| ||||    
T  36514496 ctctaatgttgtcctttctaattctatcccgtttagtcttaccacacatccaacgcaacatcctcatctctgctacacttaattta 36514581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 14593848 - 14593676
Alignment:
Q  24 tacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaact--ctcac 120  Q
    ||||||||| ||| |||||||  |||||||||||||||||||||||| |||||||||||| |||||||| |||     ||||| |||||| ||  ||| |    
T  14593848 tacagaatccacaggtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttctactata-----ggtgtcaccccagctcactctc 14593754  T
Q  121 tctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacg 198  Q
    |||||||| ||||||||| ||||||  |   || |||| |||| ||||||||||| ||||||| ||||||||||||||    
T  14593753 tctctaatgttgtcatttctaattcggttccgtctagtcttaccacacatccaacgcaacatcctcatctctgctacg 14593676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 40830292 - 40830132
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| ||| |||||||||| ||||||||| ||||||||||||| |||||| |||||||||      ||||| ||||||     ||||||||||||||    
T  40830292 gtcttctctcttcatgcccaaaccacctaagtagagtttctaccatcttttcttcaataggtgc-----taccc-aactctt----tctaatattgtcat 40830203  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattttact 209  Q
    || |||||| ||||||| || |||||   ||||| |||||||||||| | |||||||||||||||||||||||    
T  40830202 ttctaattctatcatgtctacttttag--cacattcaacacaacatccttatctctgctacgcttattttact 40830132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 16013371 - 16013199
Alignment:
Q  24 tacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaact--ctcac 120  Q
    |||| |||| ||| |||||||  |||||||||||||||||||||||| |||||||||||| |||| ||| |||     ||||| |||||| ||  ||| |    
T  16013371 tacataatccacaggtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttgtactata-----ggtgtcaccccagctcactctc 16013277  T
Q  121 tctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacg 198  Q
    |||||||| ||||||||| |||||   |   || |||| |||| ||||||||||| ||||||| ||||||||||||||    
T  16013276 tctctaatgttgtcatttctaatttggttccgtctagtcttaccacacatccaacgcaacatcctcatctctgctacg 16013199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 19262637 - 19262811
Alignment:
Q  29 aatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaa 127  Q
    |||| ||| ||||||| ||||||||| |||| |||||||| | |||||||||||| ||||||||||||     |||| ||||||||||    ||||||||    
T  19262637 aatctacaggtcttctctctacatgctcaaaccacctaagccaagtttctaccatcttttctacaata-----ggtgctaccccaact----ctctctaa 19262727  T
Q  128 tattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattttactag 211  Q
    ||||||||||| ||| || ||||||| |||| |||| ||| |||  ||  |||||| |||||||  ||||| ||| ||||||||    
T  19262728 tattgtcatttctaactctatcatgtctagtattaccacatatcacacgtaacatcctcatctccactacgattaatttactag 19262811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 43282500 - 43282330
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctacc-atttttctacaataggtgtggtgttaccccaa 113  Q
    ||||||| ||||||||||  || ||||||| ||||||||||||| ||||||||| | |||||| ||| | |||||||| |||     |||| ||||||||    
T  43282500 tctccttcctacagaatctgcaagtcttctctctacatgcccaattcacctaagcctagtttccaccgacttttctactata-----ggtgctaccccaa 43282406  T
Q  114 ctctcactctct-aatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcat 188  Q
    ||||| |||||| ||| ||||||||| ||||   ||||||| |||  |||| ||||||| ||| ||||||| ||||    
T  43282405 ctctctctctctaaatgttgtcatttctaatcatatcatgtctagacttaccacacatctaacgcaacatcctcat 43282330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 7220817 - 7220751
Alignment:
Q  34 acacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||||||| |||||||||||||| |||||||| | |||||||| ||| ||||||||||||||||    
T  7220817 acacgtcttctctctacatgcccaaaccacctaagccaagtttctatcatcttttctacaataggtg 7220751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 39812049 - 39811863
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctacca-tttttctacaataggtgtggtgttaccccaa 113  Q
    ||||||| ||| |||||| |||  |||||| ||||||||||||||  ||||||| |||||||  |||| ||||||||  |||     |||| | ||||||    
T  39812049 tctccttactatagaatctacatctcttctctctacatgcccaaactacctaagccgagttttcaccattttttctatgata-----ggtgctgccccaa 39811955  T
Q  114 ctctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||  ||||||||| ||||||||| |||| | |||| || |||| |||| ||||||||||  ||||||| |||| || ||||||||| |||||    
T  39811954 ctct--ctctctaatgttgtcatttctaatcctatcacgtctagtcttaccacacatccaaagcaacatcctcatatccgctacgcttgtttta 39811863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 28858124 - 28858051
Alignment:
Q  27 agaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||||| ||| ||| ||| |||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||    
T  28858124 agaatccacaggtcatctttctacatgcccaaaccacctaacttgagtttctaccatgttttctacaataggtg 28858051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 24550011 - 24550055
Alignment:
Q  155 tagttttacaacacatccaacacaacatcttcatctctgctacgc 199  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  24550011 tagtcttacaacacatccaacacaacatcctcatctctgctacgc 24550055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 5336004 - 5335833
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccatttttc-tacaataggtgtggtgttaccccaactctcact 121  Q
    |||||||||| |||  |||||| |||| ||||||||| |||||||||| |||||| ||||| |||| ||| |||| ||      |||||||||||||       
T  5336004 ctacagaatccacagttcttctctctatatgcccaaaccacctaagtctagtttcgaccatctttcctactatagatgc-----taccccaactctc--- 5335913  T
Q  122 ctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
     |||||| || |||||| ||||| |||  ||| |||| |||| |||||| |||| ||||||| ||||||||||||| ||||    
T  5335912 -tctaatgttatcatttctaattgcattctgtctagtcttaccacacattcaacgcaacatcctcatctctgctacactta 5335833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 12841591 - 12841646
Alignment:
Q  147 atcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    ||||||| ||||||||| || |||||||||||||||| ||||||||||||| ||||    
T  12841591 atcatgtctagttttaccactcatccaacacaacatcctcatctctgctacactta 12841646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 40008706 - 40008783
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctac 197  Q
    ||||||||| ||||||||| ||||||  |  ||| ||||||||| |||||||| || ||||||||||||||| |||||    
T  40008706 ctctctaatgttgtcatttctaattcttttttgtctagttttaccacacatcctacgcaacatcttcatctccgctac 40008783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 45558446 - 45558369
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctacc-atttttctacaataggtg 99  Q
    |||||||||| ||| || |||| ||||| ||| |||| ||||||||||||||||||||| | |||||||| |||||||    
T  45558446 ctacagaatccacaggtattctctctacgtgcacaaaccacctaagtcgagtttctaccaacttttctactataggtg 45558369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 36869572 - 36869660
Alignment:
Q  114 ctctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    ||||| |||||||||  |||||||  |||| | |||||||  ||| |||| || |||||||||||||||| ||||||||||||| ||||    
T  36869572 ctctctctctctaatggtgtcattcctaatcctatcatgtccagtcttaccactcatccaacacaacatcctcatctctgctacactta 36869660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 6420680 - 6420747
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctacca 82  Q
    ||||||| |||||| ||| ||| ||||||| |||||||||||||| |||||||| | |||||| ||||    
T  6420680 tctccttactacagtatctacaagtcttctctctacatgcccaaaccacctaagcctagtttccacca 6420747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 30200176 - 30200239
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgt 100  Q
    ||||||||| |||||||| |||||||||||| | |||||| ||||| |||||||| ||||||||    
T  30200176 gtcttctatttacatgccaaaatcacctaagcctagtttccaccatcttttctactataggtgt 30200239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 30200288 - 30200335
Alignment:
Q  160 ttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||| ||||||||||||||||||| ||||||||||||| |||| ||||    
T  30200288 ttaccacacatccaacacaacatcctcatctctgctacacttagttta 30200335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 30914691 - 30914742
Alignment:
Q  48 tacatgcccaaatcacctaagtcgagtttctacca-tttttctacaataggt 98  Q
    |||||||||||| |||| ||| ||||||||||||| ||||||||||||||||    
T  30914691 tacatgcccaaaccaccaaagccgagtttctaccattttttctacaataggt 30914742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 33073021 - 33072862
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| ||||||||||||||||| ||||| | | |||||||||  |||||||| |||||||      |||||| ||||||    ||||||  ||||||    
T  33073021 gtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgc-----tacccccactctc----tctaatggtgtcat 33072931  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattt 205  Q
    |  |||| | ||| ||| |||| |||| || |||||||| ||||||| ||||||||||||| |||||||    
T  33072930 tcctaatcctatcttgtctagtcttaccactcatccaacgcaacatcatcatctctgctacacttattt 33072862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 42187429 - 42187382
Alignment:
Q  155 tagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||| |||| ||||||||||||||||||| ||||||| ||||||||||    
T  42187429 tagtcttactacacatccaacacaacatcctcatctccgctacgctta 42187382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 33350095 - 33350177
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  ||||||| ||||| | ||||||| |||| |||| || |||||||  ||||||| ||||||||||||| ||||    
T  33350095 ctctctaatggtgtcattcttaatcctatcatgtctagtcttaccactcatccaaggcaacatcctcatctctgctacactta 33350177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 25579395 - 25579447
Alignment:
Q  155 tagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||| |||| ||||||||||| ||||||| |||||||  ||||||||||||||    
T  25579395 tagtattaccacacatccaacgcaacatcctcatctcctctacgcttatttta 25579447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 35713787 - 35713715
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccattttt 87  Q
    ||||||| ||||| |||  ||| ||||||| |||||||||||||| |||||||| | | |||| |||||||||    
T  35713787 tctccttactacaaaatgtacaagtcttctctctacatgcccaaaccacctaagcctattttccaccattttt 35713715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 33084127 - 33083964
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| ||||||| |||||| |||||||||| |||||||||||| |||||||| |||||||      |||||||||||||  |||||||||| |||||    
T  33084127 gtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgc-----taccccaactctc--tctctaatatcgtcat 33084035  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    || |||||| |||   | |||| |||| ||||||||||| || |||| |||| ||||||||||||| ||||    
T  33084034 ttctaattctatcccatctagtcttaccacacatccaacgcagcatcctcatttctgctacgcttacttta 33083964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 33998293 - 33998380
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||||| | ||||||| |||| | ||||  | |||| |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  33998293 ctctctaatgtagtcatttctaatcctatcacatctagtcttaccacacatccaacgcaacatcttcatctctgctacgcttaattta 33998380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 32755931 - 32755835
Alignment:
Q  101 ggtgttaccccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctac 197  Q
    |||| |||||| |||||| |||||||||  |||||||  ||||   ||||||| |||| |||| || |||||||||||||||| |||||||||||||    
T  32755931 ggtgctacccccactctctctctctaatggtgtcattcctaatattatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctac 32755835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 2079286 - 2079239
Alignment:
Q  160 ttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  2079286 ttaccacacatccaacacaacatcatcatctccgctacgcttatttta 2079239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 9568651 - 9568590
Alignment:
Q  122 ctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatc 183  Q
    ||||||| ||||||||| |||||| ||||||| |||| |||| ||||||||||| |||||||    
T  9568651 ctctaatgttgtcatttataattctatcatgtctagtcttaccacacatccaacgcaacatc 9568590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 6293696 - 6293740
Alignment:
Q  158 ttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||    
T  6293696 ttttaccacacatccaacacaacatcctcatctctgctatgctta 6293740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 28085369 - 28085287
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  |||||||  |||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  28085369 ctctctaatggtgtcattcgtaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacactta 28085287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 9593904 - 9593973
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctac 91  Q
    |||||| ||| ||| ||||||| |||||||||||||| |||||||| | | |||||||||| ||||||||    
T  9593904 ctacagcatctacatgtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctac 9593973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 36545218 - 36545058
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctacc-atttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| |||||||||||||| || ||||| | | |||||||| | |||||||| |||     ||||||||||| |||||| |||||||||  ||||||    
T  36545218 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactata-----ggtgttacccccactctctctctctaatggtgtcat 36545124  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |  |||| | ||||||| |||| |||| || |||||||||||||||| ||||||||||||| ||||    
T  36545123 tcctaatcctatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctacactta 36545058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 32043685 - 32043522
Alignment:
Q  12 tattctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccc 110  Q
    |||||||||| |||||  ||| ||| ||||||| |||||||| ||||| |||| ||||| |||||||||||| |||| ||| |||     |||| |||||    
T  32043685 tattctccttactacaacatccacaggtcttctctctacatggccaaaccaccaaagtctagtttctaccatcttttgtactata-----ggtgataccc 32043591  T
Q  111 caactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaaca 181  Q
    |||||||  ||||||||| ||||||||| |||||| |||  || |||| |||| ||||||||||| |||||    
T  32043590 caactct--ctctctaatgttgtcatttctaattctatcccgtctagtcttaccacacatccaacgcaaca 32043522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 39051152 - 39051047
Alignment:
Q  101 ggtgttaccccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    ||||||| ||||||||||  |||| ||||||||||||| |||||| ||||||| | || |||| ||||||| ||||||||||| |||||| || | ||||    
T  39051152 ggtgttatcccaactctc--tctcgaatattgtcatttctaattctatcatgtcttgtcttaccacacatctaacacaacatcctcatctatg-ttcgct 39051056  T
Q  201 tattttact 209  Q
    |||||||||    
T  39051055 tattttact 39051047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 40813334 - 40813228
Alignment:
Q  101 ggtgttaccccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    |||| |||||| |||||| |||||||||  ||||||| ||||| | || |||| |||| |||| || |||||||||||||||| | ||||||||||| ||    
T  40813334 ggtgctacccccactctctctctctaatggtgtcattcttaatcctattatgtctagtcttaccactcatccaacacaacatcctaatctctgctacact 40813235  T
Q  201 tatttta 207  Q
    || ||||    
T  40813234 tacttta 40813228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 9695712 - 9695638
Alignment:
Q  26 cagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| ||| | ||||| |||||||||||||| |||||||| |||||||| ||||| |||||||| |||||||    
T  9695712 cagaatctacaggacttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctactataggtg 9695638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 2776442 - 2776504
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| || ||||||||||| |||||||| ||||||||||||||  ||||||| |||||||    
T  2776442 gtcttctctcaacatgcccaaaccacctaagccgagtttctaccatcatttctacgataggtg 2776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 35601946 - 35601904
Alignment:
Q  165 acacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||||||||||||| |||| |||||||||||||| ||||||||    
T  35601946 acacatccaacacagcatcctcatctctgctacgtttatttta 35601904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 7103254 - 7103185
Alignment:
Q  121 tctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatct 190  Q
    |||||||| ||||||||| |||| | |||   | |||||||||| ||||||||||| |||||||||||||    
T  7103254 tctctaatgttgtcatttataatcctatctcatctagttttacagcacatccaacaaaacatcttcatct 7103185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 39953580 - 39953633
Alignment:
Q  147 atcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    |||||||||| | |||| ||||||||||| ||||||  ||||||||||||||||    
T  39953580 atcatgtttaatcttaccacacatccaacgcaacattctcatctctgctacgct 39953633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 39760758 - 39760790
Alignment:
Q  165 acacatccaacacaacatcttcatctctgctac 197  Q
    ||||||||||||||||||| |||||||||||||    
T  39760758 acacatccaacacaacatcctcatctctgctac 39760790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 41444625 - 41444661
Alignment:
Q  160 ttacaacacatccaacacaacatcttcatctctgcta 196  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  41444625 ttacaacacatccaacacaacatcctcatctccgcta 41444661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 41971968 - 41972020
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaa 67  Q
    ||||||||||| | |||| ||||||||||| |||||||| ||||| |||||||    
T  41971968 tctccttgctagaaaatctacacgtcttctctctacatgtccaaaccacctaa 41972020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 29375025 - 29374911
Alignment:
Q  16 ctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaac 114  Q
    |||||| ||||| |||| ||| ||||| | |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||    | |||||||||    
T  29375025 ctccttactacaaaatctacaggtcttttctctacaagcccaaatcacctaagtcgagtttctaccatcttttctccaataggtg----gctaccccaac 29374930  T
Q  115 tctcactctctaatattgt 133  Q
    |||  ||||||||||||||    
T  29374929 tctatctctctaatattgt 29374911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 33272235 - 33272399
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| |||||||||||||| || ||||| | | |||||||||  |||||||| |||  |  |||| |||||| |||||| |||||||||  ||||||    
T  33272235 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatatata-ggtgctacccccactctctctctctaatggtgtcat 33272333  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    | ||||| | ||||||| |||| |||| || |||||||  ||||||| ||||||||||||| ||||    
T  33272334 tcttaatcctatcatgtctagtcttaccactcatccaatgcaacatcctcatctctgctacactta 33272399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 46568115 - 46568027
Alignment:
Q  114 ctctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    ||||| ||||||||| ||||||||| |||||| |||  || |||| |||  ||||||||||||||||||| ||||||||||||| ||||    
T  46568115 ctctctctctctaatgttgtcatttctaattcaatctggtctagtcttaacacacatccaacacaacatcctcatctctgctacactta 46568027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 207
Target Start/End: Complemental strand, 49841688 - 49841517
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg-tggtgttaccccaactctcactctctaatattgtca 135  Q
    ||||||| |||||| ||||||| ||||| |||| |||||| ||||| |||||||  ||||||| |   | ||||||||||||| ||| ||||| ||||||    
T  49841688 gtcttctctctacacgcccaaaccaccttagtctagtttccaccatcttttctaatataggtgctacggctaccccaactctctctcactaatgttgtca 49841589  T
Q  136 tttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||| ||||   | |  || |||| |||| ||||||||||||||||||| |||||| |||||| |||| ||||    
T  49841588 tttctaatcttacctcgtctagtcttactacacatccaacacaacatcctcatctatgctacacttaattta 49841517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 21200640 - 21200563
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctac 91  Q
    ||||||| || ||||||| ||| ||||||| |||||||||||||| |||||||||| |||||| ||||| ||||||||    
T  21200640 tctccttactgcagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctac 21200563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 3987116 - 3987054
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| ||||||| |||||| |||||||||| |||||||||||| |||||||| |||||||    
T  3987116 gtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctactataggtg 3987054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 52138869 - 52138711
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| |||||||||||||| || ||||| | | |||||||||  |||||||| |||||||      |||||| ||||||  ||||||||  ||||||    
T  52138869 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgc-----tacccccactctc--tctctaatggtgtcat 52138777  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |  |||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  52138776 tcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacactta 52138711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 27917517 - 27917483
Alignment:
Q  168 catccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||||||||| ||||||||||||||||||    
T  27917517 catccaacacaacatcctcatctctgctacgctta 27917483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 49503767 - 49503829
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| |||||||||||||| |||||||| | | |||||||||| |||||||| |||||||    
T  49503767 gtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtg 49503829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 50960846 - 50960908
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| |||||||||||||| |||||||| | | |||||||||| |||||||| |||||||    
T  50960846 gtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtg 50960908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 1290067 - 1290112
Alignment:
Q  54 cccaaatcacctaagtcgagtttctaccatttttctacaataggtg 99  Q
    ||||||||||| |||||||| ||| |||||||||| ||||||||||    
T  1290067 cccaaatcaccaaagtcgagattcaaccatttttcaacaataggtg 1290112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 11581513 - 11581468
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat 83  Q
    ||||||| ||||||| |||||| |||||||||| ||||||||||||    
T  11581513 gtcttctctctacatacccaaaccacctaagtctagtttctaccat 11581468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 25191372 - 25191283
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattttact 209  Q
    |||||||||  ||||||| |||||   ||||||| |||| |||| || |||||| | ||||||| ||||||||||||| |||| ||||||    
T  25191372 ctctctaatgatgtcattcttaatcatatcatgtctagtcttaccactcatccagcgcaacatcctcatctctgctacacttactttact 25191283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 39535639 - 39535716
Alignment:
Q  24 tacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgt 100  Q
    ||||||||| | | ||||||| ||||| |||| ||| |||||||| || ||||||||||| |||||||| ||||||||    
T  39535639 tacagaatctataggtcttctctctacttgcctaaaccacctaagccgggtttctaccatcttttctactataggtgt 39535716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 42510335 - 42510387
Alignment:
Q  155 tagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||| |||| ||||||||||  ||||||| |||||||||||| ||||||||||    
T  42510335 tagtcttaccacacatccaatgcaacatcctcatctctgctatgcttatttta 42510387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 46367702 - 46367761
Alignment:
Q  150 atgtttagttttacaacacat--ccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||||| |||| ||||||  ||||||||||||| |||||||| |||| |||||||||    
T  46367702 atgtttagtcttaccacacatatccaacacaacatcctcatctctactacacttatttta 46367761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 4598775 - 4598934
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccattttt-ctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| |||| ||| ||||| |||| ||||| |||||||||||| ||| |||| |||||||      ||||||||||||| ||||||||| | |||||    
T  4598775 gtcttctttctatatgtccaaaccaccaaagtctagtttctaccatctttactactataggtgc-----taccccaactctctctctctaatgtcgtcat 4598869  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctt 201  Q
    ||| ||||| |||  || |||| |||| ||||||||||| ||||||| |||| ||||||||||||    
T  4598870 tttgaattctatcccgtctagtcttaccacacatccaacgcaacatcatcatttctgctacgctt 4598934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 9578990 - 9579061
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctc 191  Q
    |||||||| ||||||||||||||||| ||||| | || | |||| ||||||||||| ||||||||| |||||    
T  9578990 ctctctaacattgtcatttttaattctatcatatctattcttaccacacatccaacgcaacatctttatctc 9579061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 7825370 - 7825264
Alignment:
Q  101 ggtgttaccccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    |||| ||| ||||| ||| |||||||||| |||||||| ||||   |||  || |||| |||| ||||||||||| ||||||| | ||||||||||||||    
T  7825370 ggtgctactccaacactctctctctaatagtgtcatttctaatcatatccagtctagtcttaccacacatccaacgcaacatcctaatctctgctacgct 7825271  T
Q  201 tatttta 207  Q
    || ||||    
T  7825270 tacttta 7825264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 8180773 - 8180691
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  |||||||  |||| | ||||||| |||| |||| || |||||||||||||||| ||||||||||||| ||||    
T  8180773 ctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatccaacacaacatcctcatctctgctacactta 8180691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 36039171 - 36039129
Alignment:
Q  165 acacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  36039171 acacatccaacacaacatcttcatctctgctacgattacttta 36039129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 44437920 - 44437994
Alignment:
Q  24 tacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaatagg 97  Q
    ||||||||| ||| ||||||| |||||||||| ||| |||||| ||| |||||||||||| |||||||| |||||    
T  44437920 tacagaatccacaagtcttctctctacatgccgaaaccacctatgtctagtttctaccatcttttctactatagg 44437994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 9556567 - 9556720
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccatttttctacaataggtgtggtgttaccccaactctcactc 122  Q
    |||||||||| ||  ||||||| |||||||||| ||| |||||||| | | |||| ||||||||||||| |||      |||||||||||||| |  |||    
T  9556567 ctacagaatctacttgtcttctctctacatgcctaaaccacctaagcctattttccaccatttttctactata-----agtgttaccccaacttt--ctc 9556659  T
Q  123 tctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatc 183  Q
    |||||| ||||||||| ||||   |||  || || | |||| |||||||||||||||||||    
T  9556660 tctaatgttgtcatttctaatcatatcccgtctaatcttaccacacatccaacacaacatc 9556720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 13240935 - 13241003
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat 83  Q
    ||||||| ||| |||||| ||| ||||||| |||||||||||||| |||||||| | |||||| |||||    
T  13240935 tctccttactaaagaatctacatgtcttctctctacatgcccaaaccacctaagcctagtttccaccat 13241003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 24583922 - 24583977
Alignment:
Q  147 atcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||||| |||| || |||||  ||||||||||||||||||||||| ||||    
T  24583922 atcatgtttagtcttaccactcatcccgcacaacatcttcatctctgctacactta 24583977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 1456181 - 1456139
Alignment:
Q  165 acacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||    
T  1456181 acacatccaacacaacatcctcatctccgctacacttatttta 1456139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 36183444 - 36183362
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  |||||||  |||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  36183444 ctctctaattgtgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacactta 36183362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 3481233 - 3481180
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaag 68  Q
    |||||||||||||||||| | | ||||||| |||||||| ||||| ||||||||    
T  3481233 tctccttgctacagaatctataggtcttctctctacatgtccaaaccacctaag 3481180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 41779521 - 41779570
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccattttt 87  Q
    ||||||| ||||||||  |||| ||||||||||||||||| |||||||||    
T  41779521 gtcttctctctacatgatcaaaccacctaagtcgagtttccaccattttt 41779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 45077727 - 45077654
Alignment:
Q  134 catttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||| |||||| |||  || |||| |||| ||||||||||| ||||||| ||||||| |||| ||||||||||    
T  45077727 catttctaattctatctagtctagtcttaccacacatccaacgcaacatcctcatctcagctatgcttatttta 45077654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 23714550 - 23714634
Alignment:
Q  123 tctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||||| | |||||||||||| | ||  ||| |||| |||| ||||||||||||||||||  | |||||||||| ||||| ||||    
T  23714550 tctaatgtcgtcatttttaatcctattttgtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaattta 23714634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 24102222 - 24102306
Alignment:
Q  123 tctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||||| | |||||||||||| | ||  ||| |||| |||| ||||||||||||||||||  | |||||||||| ||||| ||||    
T  24102222 tctaatgtcgtcatttttaatcctattttgtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaattta 24102306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 41330095 - 41330059
Alignment:
Q  155 tagttttacaacacatccaacacaacatcttcatctc 191  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  41330095 tagttttaccacacatccaacacaacatcatcatctc 41330059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 42543319 - 42543263
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttcta 79  Q
    |||||||||| ||| ||||||| | |||||||||||| |||||||||  ||||||||    
T  42543319 ctacagaatccacaggtcttctctgtacatgcccaaaccacctaagtttagtttcta 42543263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 26016529 - 26016343
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaa 113  Q
    |||||||||||||||||  | | ||||||| ||||||| |||||| ||||||| || |||||||||||| ||||||   ||||||||     ||||||||    
T  26016529 tctccttgctacagaatgcataggtcttctttctacatacccaaaccacctaaatctagtttctaccatcttttctcatataggtgt-----taccccaa 26016435  T
Q  114 ctctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||||  ||||||||    | |||| |||||  ||| ||| |||| |||| ||||||||||| ||||||| |||||||||||||||||| ||||    
T  26016434 ctctc--tctctaatgccattatttataattatatcctgtctagtcttaccacacatccaacgcaacatcctcatctctgctacgcttacttta 26016343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 40419731 - 40419545
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaa 113  Q
    ||||||||||||| |||| ||| ||||||| |||||||||||||| ||| |||||| |||| ||||||| | |||||| |||      ||  ||||||||    
T  40419731 tctccttgctacataatccacatgtcttctctctacatgcccaaaccacttaagtctagttactaccatctattctactata-----agttctaccccaa 40419637  T
Q  114 ctctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||  ||||||||| ||||||||| |||||| |||   | ||||||||| | |||| |||| || |||| ||||||||||||| |||| ||||    
T  40419636 ctct--ctctctaatgttgtcatttctaattctatctcatctagttttaccatacattcaacgcaccatcctcatctctgctacacttacttta 40419545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 9509387 - 9509229
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| ||||||||||||||  ||||||| | | ||| |||||| |||||||| |||||||      |||||||||||||  ||||||||  ||||||    
T  9509387 gtcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgc-----taccccaactctc--tctctaatggtgtcat 9509295  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    || ||||   ||| ||| |||| |||  || |||||||||||||||| ||||||||||||||||||    
T  9509294 ttctaatcatatcctgtctagtcttatcactcatccaacacaacatcctcatctctgctacgctta 9509229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 29807950 - 29807891
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctacca 82  Q
    ||||| |||| ||| ||||||| |||||||||||||||||| |||||| |||||||||||    
T  29807950 ctacataatccacatgtcttctctctacatgcccaaatcacgtaagtctagtttctacca 29807891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 52442781 - 52442880
Alignment:
Q  106 taccccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattt 205  Q
    |||||||||||||  |||| ||| || |||||| ||||   ||| ||| |||| |||| ||||||||||||||||||| |||| ||||||||||||| ||    
T  52442781 taccccaactctc--tctccaatgttctcatttctaatcttatcttgtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatt 52442878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 8391765 - 8391676
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattttact 209  Q
    |||||||||  |||||||  |||| | ||| ||| |||| |||| || |||||||||||||||||||||||| ||||| |||| ||||||    
T  8391765 ctctctaatggtgtcattcctaatcctatcttgtgtagtcttaccactcatccaacacaacatcttcatctccgctacacttactttact 8391676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 22090106 - 22090005
Alignment:
Q  101 ggtgttaccccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    |||| |||||| |||||| |||||||||  |||||||  |||| | ||| ||| |||| |||| || ||||||||||| |||| ||||||||||||| ||    
T  22090106 ggtgctacccccactctctctctctaatggtgtcattcataatcctatcctgtctagtcttaccactcatccaacacagcatcctcatctctgctacact 22090007  T
Q  201 ta 202  Q
    ||    
T  22090006 ta 22090005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 43240651 - 43240752
Alignment:
Q  101 ggtgttaccccaactctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    |||| |||||| |||||| |||||||||   ||||||  |||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||    
T  43240651 ggtgctacccccactctctctctctaatggcgtcattcataatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacact 43240750  T
Q  201 ta 202  Q
    ||    
T  43240751 ta 43240752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 1661372 - 1661332
Alignment:
Q  167 acatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  1661372 acattcaacacaacatcttcatctctgctatgcttatttta 1661332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 4380005 - 4379917
Alignment:
Q  113 actctcactctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctt 201  Q
    |||||| ||||||||| ||||||||| ||||   ||| | | |||| |||| ||||||||||||||||||| ||||||| |||| ||||    
T  4380005 actctctctctctaatgttgtcatttctaatcatatcttttctagtcttaccacacatccaacacaacatcctcatctcagctaagctt 4379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 9599718 - 9599765
Alignment:
Q  155 tagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||| |||| || |||||||||||||||| ||||||||||||||||||    
T  9599718 tagtcttaccactcatccaacacaacatcctcatctctgctacgctta 9599765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 18793201 - 18793364
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| ||| |||||| |||||| ||||||| |||||||||||| ||||||||||||      ||  ||||||||| ||  |||| |||| | |||||    
T  18793201 gtcttctctctgcatgccaaaatcaactaagtctagtttctaccatcttttctacaata-----agtcctaccccaaccct--ctctttaatgtcgtcat 18793293  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||| ||| ||| ||| |||| || | ||||||||||| ||||||| |||| | || |||||||| ||||    
T  18793294 ttttagttctatcctgtctagtctttccacacatccaacgcaacatcatcatttatgttacgcttacttta 18793364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 9592727 - 9592645
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  |||||||  |||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  9592727 ctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacactta 9592645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 30202419 - 30202501
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  |||||||  |||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  30202419 ctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacactta 30202501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 43423803 - 43423689
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcact 121  Q
    ||||| |||| ||| ||||||| |||||||| ||||| |||||||| | |||||| ||||| |||||||| ||||||||     ||||||||||||  ||    
T  43423803 ctacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgt-----taccccaactct--ct 43423711  T
Q  122 ctctaatattgtcatttttaat 143  Q
    ||||||| | ||||||| ||||    
T  43423710 ctctaatgtggtcatttctaat 43423689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 3819058 - 3819131
Alignment:
Q  27 agaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||||| ||| ||||||| |||||||||||||| ||| |||||| |||| | ||||| |||||||| |||||||    
T  3819058 agaatccacaagtcttctttctacatgcccaaaccacttaagtctagttaccaccatcttttctaccataggtg 3819131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 10569265 - 10569310
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaag 68  Q
    |||||||||| ||| ||||||| |||||||||||||| ||||||||    
T  10569265 ctacagaatctacaggtcttctctctacatgcccaaaccacctaag 10569310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 16822235 - 16822280
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat 83  Q
    ||||||| |||||||| ||||| |||||||| ||||||||||||||    
T  16822235 gtcttctctctacatgtccaaaccacctaagccgagtttctaccat 16822280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 27637823 - 27637908
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| |||||  ||| ||| ||||| | |||||||||||||| |||||||||| |||||||| ||| |||||| | |||||||    
T  27637823 tctccttactacaacatccacatgtcttttctctacatgcccaaaacacctaagtctagtttctatcatcttttctgctataggtg 27637908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 38868974 - 38868889
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||||| |||| |||||| ||  || |||| |||||||||||||| |||||||| |||||||| ||||| |||||||  |||||||    
T  38868974 tctcctcgctagagaatctactagtgttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctatgataggtg 38868889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 51440978 - 51441131
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctacc-atttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| |||||||||||||| || ||||| | | |||||||| | |||||||| |||     ||||||||||| |||||  |||||||||  ||||||    
T  51440978 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactata-----ggtgttacccccactct--ctctctaatggtgtcat 51441070  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctac 197  Q
    |  |||| | ||||||| |||| |||| || | |||||  ||||||| |||||||||||||    
T  51441071 tcctaatcctatcatgtctagtcttaccactcgtccaatgcaacatcctcatctctgctac 51441131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 52160452 - 52160501
Alignment:
Q  41 ttctatctacatgcccaaatcacctaagtcgagtttctaccatttttcta 90  Q
    ||||||||||||| ||||| |||||||| || ||||| ||||||||||||    
T  52160452 ttctatctacatgtccaaaccacctaagccgggtttccaccatttttcta 52160501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 19908229 - 19908281
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaa 67  Q
    ||||||| ||||| |||| ||| || |||| ||||||||||||||||||||||    
T  19908229 tctccttactacataatctacaggttttctctctacatgcccaaatcacctaa 19908281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 436298 - 436140
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcat 136  Q
    ||||||| ||||||||||||||||| ||||| | | |||||||||  |||||||| |||||||      |||||| ||||||  ||||||||  ||||||    
T  436298 gtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgc-----tacccccactctc--tctctaatggtgtcat 436206  T
Q  137 ttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    | ||||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  436205 tcttaatcctatcatgtctagtcttacgactcatccaacgcaacatcctcatctctgctacactta 436140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 35555845 - 35555922
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||||||||| ||| ||||||| |||| ||||||||| |||||||||| |||||||||||| |||||||| |||||||    
T  35555845 ctacagaatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactataggtg 35555922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 41192920 - 41192764
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcact 121  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| ||||| ||||||||  ||     |||| ||||||||||||| ||    
T  41192920 ctacagaatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgta-----ggtgctaccccaactctctct 41192826  T
Q  122 ctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatc 183  Q
    ||||||   |||||||| |||||  ||| ||| || |  ||| ||||||||||| |||||||    
T  41192825 ctctaacgctgtcatttataattgtatcctgtctaatcataccacacatccaacgcaacatc 41192764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 46715562 - 46715647
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||||||||| |||| ||| ||||||| |||||||||||| | |||||||| | |||||| ||||| ||||||||||||||||    
T  46715562 tctccttgctacataatccacatgtcttctctctacatgcccacaccacctaagcctagtttccaccatcttttctacaataggtg 46715647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 25257868 - 25257948
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgct 200  Q
    ||||||||| ||||||||| |||||| ||||||| |||| |||| |||||||||||||||||   |||||| |||||||||    
T  25257868 ctctctaatgttgtcatttctaattctatcatgtctagtcttactacacatccaacacaacaagctcatctttgctacgct 25257948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 44360155 - 44359995
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactc--tctaatattgtc 134  Q
    ||||||| ||||||||||||||  |||||| || |||||||||||| |||||||| |||||||      ||||||||||||| |||  ||||||||||||    
T  44360155 gtcttctctctacatgcccaaacaacctaa-tctagtttctaccatcttttctactataggtga-----taccccaactctctctccatctaatattgtc 44360062  T
Q  135 atttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||| |||||| |||  |  ||||  ||| ||||||||||||||||||  ||||||| ||||||||||    
T  44360061 atttctaattctatctcgcctagtcctaccacacatccaacacaacat-atcatctcagctacgctta 44359995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 27991704 - 27991791
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||||||| || ||||||||||| |||   | || | |||| |||||||||||||||||||||||| |||||||| |||||||||    
T  27991704 ctctctaatatcgttatttttaattctatctcatctaatcttaccacacatccaacacaacatcttcatttctgctacacttatttta 27991791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 33710008 - 33709825
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcact 121  Q
    |||||||||| |||  |||||| || ||||||| ||| |||||||  | |||||| ||||| |||||||| ||||||||     |||||||||||||  |    
T  33710008 ctacagaatccacagttcttctctccacatgcctaaaccacctaaacctagtttccaccatcttttctactataggtgt-----taccccaactctc--t 33709916  T
Q  122 ctctaatattgtcatttttaat----tcc-atcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||| ||| ||||| ||||    ||| ||||||| |||| |||| ||||||||||| ||||||| |||||||||||| ||||| ||||    
T  33709915 ctctaatgttgccatttctaatcctatcctatcatgtctagtcttaccacacatccaacgcaacatcatcatctctgctaggcttaattta 33709825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 42285898 - 42285972
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaatag 96  Q
    |||||||||| ||| ||||||| | |||||||||||| |||||||||| |||||||||||| |||||||| ||||    
T  42285898 ctacagaatccacaggtcttctctatacatgcccaaaccacctaagtctagtttctaccatcttttctactatag 42285972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 49987418 - 49987337
Alignment:
Q  123 tctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatt 204  Q
    |||||| ||||||||| |||| | ||||||| |||| |||| | |||| |||||||||||| |||||||||||| |||||||    
T  49987418 tctaatgttgtcatttctaatcctatcatgtctagtcttactaaacattcaacacaacatcctcatctctgctaagcttatt 49987337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 10775658 - 10775798
Alignment:
Q  61 cacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcactctctaatattgtcatttttaattccatcatgtttagtt 159  Q
    |||||| ||| |||||||||||| |||||||| ||||||||     ||||||||| |||  |||||||| ||||||||| ||||||  || ||| | ||     
T  10775658 cacctatgtctagtttctaccatcttttctactataggtgt-----taccccaacactc--tctctaatgttgtcatttctaattctttcctgtctggtc 10775750  T
Q  160 ttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
     | | || |||||||||||||||| |||||||||||||||||| ||||    
T  10775751 ctgccacgcatccaacacaacatcatcatctctgctacgcttaattta 10775798  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 40933188 - 40933274
Alignment:
Q  123 tctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttattttact 209  Q
    ||||||||| |||||| |||||| ||||||| | || |||| |||||| |||| ||||||| ||||||  ||||| |||||||||||    
T  40933188 tctaatattttcatttctaattctatcatgtattgtcttaccacacattcaacgcaacatcctcatctacgctacacttattttact 40933274  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 49738817 - 49738879
Alignment:
Q  38 gtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| | |||| || ||||||||||||| |||||||||||||| ||||||||||||||||    
T  49738817 gtcttctctttacacgctcaaatcacctaagccgagtttctaccatcttttctacaataggtg 49738879  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 21214770 - 21214823
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaag 68  Q
    ||||||| ||||||||| |||| ||||||| |||||||||||||| ||||||||    
T  21214770 tctccttactacagaattaacaagtcttctctctacatgcccaaaccacctaag 21214823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 31339626 - 31339545
Alignment:
Q  17 tccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccatttttctacaataggt 98  Q
    ||||| ||||| |||| ||| ||||||| ||||||||| |||| ||||||||   |||||| ||||||||||||| ||||||    
T  31339626 tccttactacataatctacaagtcttctctctacatgctcaaaccacctaagcttagtttcgaccatttttctaccataggt 31339545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 54470299 - 54470214
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    ||||||| ||||| |||  ||| ||||||| |||||||||||||| ||| |||||| |||||| ||||| |||||||| |||||||    
T  54470299 tctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtg 54470214  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 2589074 - 2589014
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat 83  Q
    |||||||||| ||| || |||| |||||||||| ||| |||||||||| ||||||||||||    
T  2589074 ctacagaatccacaagttttctctctacatgcctaaaccacctaagtctagtttctaccat 2589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 11389678 - 11389626
Alignment:
Q  155 tagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||||| ||||||||||  ||||||| |||||||||||||||||| ||||    
T  11389678 tagttttaccacacatccaatccaacatcctcatctctgctacgcttacttta 11389626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 30853362 - 30853322
Alignment:
Q  167 acatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  30853362 acatccaacacaacatcttcatctccgctgcgcttatttta 30853322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 51550438 - 51550502
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttcta 79  Q
    ||||||||||| |||||| |||  |||||| |||||||||||||| |||||||||| ||| ||||    
T  51550438 tctccttgctagagaatccacatatcttctctctacatgcccaaaccacctaagtctagtctcta 51550502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 43070052 - 43070135
Alignment:
Q  119 actctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||| ||||||||| |||| | ||| ||| || | |||| ||||||||||| ||||||  ||||||||||||| ||||    
T  43070052 actctctaatgttgtcatttctaatcctatcctgtctaatcttaccacacatccaacccaacatgatcatctctgctacactta 43070135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 12494743 - 12494661
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  |||||||  |||| | ||||||| |||| |||| || |||||||| ||||||| ||||||||||||| ||||    
T  12494743 ctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatccaacgcaacatcctcatctctgctacactta 12494661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 17900564 - 17900386
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtgtggtgttaccccaactctcact 121  Q
    ||||| |||| ||| ||||||| ||||| |||||||| ||| | |||| |||||||||| | |||||||| |||||||      |||||||||||    |    
T  17900564 ctacataatccacaggtcttctctctacgtgcccaaaccacatgagtctagtttctaccgtcttttctactataggtgc-----taccccaactccg--t 17900472  T
Q  122 ctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    ||||||| | ||||||| |||||  |||   | |||| |||| ||||||||||| ||||||| |||| ||||||||||||| ||||    
T  17900471 ctctaatgtcgtcatttctaattttatcccatctagtcttaccacacatccaacgcaacatcctcatttctgctacgcttacttta 17900386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 18499854 - 18499784
Alignment:
Q  132 gtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||| ||| |||  || |||| |||  |||||||||||||||||||||||| ||||||| |||||    
T  18499854 gtcatttttagttctatctcgtctagtcttatcacacatccaacacaacatcttcatttctgctatgctta 18499784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 33227202 - 33227120
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  ||||||| ||||| | ||||||| |||| |||| || |||||| | ||||||| ||||||||||||| ||||    
T  33227202 ctctctaatggtgtcattcttaatcctatcatgtctagtcttaccactcatccagcgcaacatcctcatctctgctacactta 33227120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 45094464 - 45094538
Alignment:
Q  133 tcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||||| |||| | ||| ||| |||| |||| ||||||||||||||||||| |||||||  ||| ||||||||||    
T  45094464 tcatttctaatactatcttgtctagtattactacacatccaacacaacatcctcatctccactatgcttatttta 45094538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 51841480 - 51841550
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatct 190  Q
    ||||||||||||||| |||   |||| ||| ||| |||| |||| ||||||||||||||||||||| ||||    
T  51841480 ctctctaatattgtcgtttcatattctatcttgtctagtcttaccacacatccaacacaacatctttatct 51841550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 28497581 - 28497528
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaag 68  Q
    ||||||| ||||| |||| ||| ||||||| |||||||||||||| ||||||||    
T  28497581 tctccttactacataatctacaagtcttctctctacatgcccaaaccacctaag 28497528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 31897626 - 31897695
Alignment:
Q  23 ctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctac 91  Q
    |||||||||| ||| |||| || ||||||||| |||| |||| ||||| |||||||||||| ||||||||    
T  31897626 ctacagaatccacaggtctgctctctacatgcgcaaaccacccaagtctagtttctaccatcttttctac 31897695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 42293439 - 42293524
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||||||||||  ||||| ||| ||| ||| ||||||| |||||| |||||||| |||||||| | ||| |||||||| |||||||    
T  42293439 tctccttgctatggaatctacatgtcgtctttctacatacccaaaccacctaagccgagtttccatcatcttttctactataggtg 42293524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 51252651 - 51252728
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctac 91  Q
    ||||||||| | |||||| ||| ||||||| |||||||||||| | |||||||| | |||||| ||||| ||||||||    
T  51252651 tctccttgccatagaatccacatgtcttctctctacatgcccataccacctaagcctagtttccaccatcttttctac 51252728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 31452402 - 31452458
Alignment:
Q  135 atttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctc 191  Q
    ||||||||||| ||||||| | || |||||| ||||||||  |||||||||||||||    
T  31452402 atttttaattctatcatgtcttgtcttacaatacatccaatgcaacatcttcatctc 31452458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 32339663 - 32339611
Alignment:
Q  15 tctccttgctacagaatcaacacgtcttctatctacatgcccaaatcacctaa 67  Q
    ||||||| ||| |||||||||| ||||||| || | |||||||||||||||||    
T  32339663 tctcctttctatagaatcaacaggtcttctctccagatgcccaaatcacctaa 32339611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 44860812 - 44860760
Alignment:
Q  155 tagttttacaacacatccaacacaacatcttcatctctgctacgcttatttta 207  Q
    |||| |||| ||||||||||||||||||| |||| |||||||| |||| ||||    
T  44860812 tagtcttaccacacatccaacacaacatcctcatttctgctacacttaattta 44860760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 11866 - 11805
Alignment:
Q  39 tcttctatctacatgcccaaatcacctaagtcgagtttctaccat-ttttctacaataggtg 99  Q
    |||||| |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||    
T  11866 tcttctctctacatgcccaaaccacctaagccgagttcctaccatcttttctacaataggtg 11805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 25734 - 25816
Alignment:
Q  120 ctctctaatattgtcatttttaattccatcatgtttagttttacaacacatccaacacaacatcttcatctctgctacgctta 202  Q
    |||||||||  |||||||  |||| | ||||||| |||| |||| || |||||||||||||||| | ||||||||||| ||||    
T  25734 ctctctaatggtgtcattcctaatcctatcatgtctagtcttaccactcatccaacacaacatcctaatctctgctacactta 25816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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