View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_low_17 (Length: 416)
Name: NF17043_low_17
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 98 - 402
Target Start/End: Complemental strand, 29784012 - 29783708
Alignment:
| Q |
98 |
cagtggggccatttacttctattgttttctgttttcatttttactaacaaaataaacgttagagaagtattaagattttgaaaatgcatttgaaaataga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29784012 |
cagtggggccatttacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaataga |
29783913 |
T |
|
| Q |
198 |
ttgaatatttagaattcggcaaactttgaaagcattgttttcggtatttctagaaatgcattctctctagttagctactatcttctctatatcacaacta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29783912 |
ttgaatatttagaattcggcaaactttgaaagcattgttttcggtatttctagaaatgcattctctctagttagctactatcttctctatatcacaacta |
29783813 |
T |
|
| Q |
298 |
aaagataaaaccataaccaaattgcattccagctacctatatacaaaataaaaattgaaagtgaaaatagaaaatgatgttagaaagtaaacggccacaa |
397 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29783812 |
aaagataaaaccataaccaaatgtcattccagctacctatatacaaaataaaaattgaaagtgaaaatagaaaatgatgttagaaagtaaacggccacaa |
29783713 |
T |
|
| Q |
398 |
agaat |
402 |
Q |
| |
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||||| |
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| T |
29783712 |
agaat |
29783708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 98 - 402
Target Start/End: Complemental strand, 29788019 - 29787715
Alignment:
| Q |
98 |
cagtggggccatttacttctattgttttctgttttcatttttactaacaaaataaacgttagagaagtattaagattttgaaaatgcatttgaaaataga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29788019 |
cagtggggccatttacttctattgttttctgttttcatttttactaacaaaataaacattagagaagtattaagattttgaaaatgcatttgaaaataga |
29787920 |
T |
|
| Q |
198 |
ttgaatatttagaattcggcaaactttgaaagcattgttttcggtatttctagaaatgcattctctctagttagctactatcttctctatatcacaacta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787919 |
ttgaatatttagaattcggcaaactttgaaagcattgttttcggtatttctagaaatgcattctctctagttagctactatcttctctatatcacaacta |
29787820 |
T |
|
| Q |
298 |
aaagataaaaccataaccaaattgcattccagctacctatatacaaaataaaaattgaaagtgaaaatagaaaatgatgttagaaagtaaacggccacaa |
397 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787819 |
aaagataaaaccgtaaccaaatgtcattccagctacctatatacaaaataaaaattgaaagtgaaaatagaaaatgatgttagaaagtaaacggccacaa |
29787720 |
T |
|
| Q |
398 |
agaat |
402 |
Q |
| |
|
||||| |
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|
| T |
29787719 |
agaat |
29787715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 48362743 - 48362793
Alignment:
| Q |
249 |
agaaatgcattctctctagttagctactatcttctctatatcacaactaaa |
299 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||| |||||||| |||| |
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| T |
48362743 |
agaaatgcattctctctagttagcttccatcttctctctatcacaattaaa |
48362793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 20081469 - 20081577
Alignment:
| Q |
250 |
gaaatgcattctctctagttagctactatcttctctatatcacaacta-aaagataaaaccataaccaaattgcattccagctacctatatacaaaataa |
348 |
Q |
| |
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|||||||||||||||||||||||| |||| |||| | |||||||| || ||||| ||| ||||| ||||| |||||||||| ||||| || |||| || |
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| T |
20081469 |
gaaatgcattctctctagttagcttctatattctgtctatcacaattagaaagaaaaattcataaacaaatggcattccagccacctacattcaaagaaa |
20081568 |
T |
|
| Q |
349 |
aaattgaaa |
357 |
Q |
| |
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||||||||| |
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| T |
20081569 |
aaattgaaa |
20081577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 9845036 - 9844959
Alignment:
| Q |
217 |
caaactttgaaagcattgttttcggtatttctagaaatgcattctctctagttagctactatcttctctatatcacaa |
294 |
Q |
| |
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|||||||| ||| |||| ||||| | |||| | |||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
9845036 |
caaactttcaaaacattattttcattgtttccaaaaatgcattctctctagttaacttctatcttctctctatcacaa |
9844959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 2022709 - 2022673
Alignment:
| Q |
222 |
tttgaaagcattgttttcggtatttctagaaatgcat |
258 |
Q |
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||||||| ||||||||||||||||||| ||||||||| |
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| T |
2022709 |
tttgaaaacattgttttcggtatttctggaaatgcat |
2022673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 42636127 - 42636159
Alignment:
| Q |
175 |
ttgaaaatgcatttgaaaatagattgaatattt |
207 |
Q |
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|||||||||||||| |||||||||||||||||| |
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|
| T |
42636127 |
ttgaaaatgcatttcaaaatagattgaatattt |
42636159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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