View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17043_low_18 (Length: 416)

Name: NF17043_low_18
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17043_low_18
NF17043_low_18
[»] chr3 (4 HSPs)
chr3 (8-394)||(51057226-51057615)
chr3 (343-375)||(17114077-17114109)
chr3 (328-373)||(25498446-25498491)
chr3 (296-369)||(38258421-38258494)
[»] chr2 (6 HSPs)
chr2 (296-373)||(1242307-1242384)
chr2 (296-373)||(3258058-3258135)
chr2 (308-372)||(5050983-5051047)
chr2 (306-373)||(36592552-36592615)
chr2 (306-360)||(1894778-1894832)
chr2 (311-363)||(38531934-38531986)
[»] chr7 (5 HSPs)
chr7 (308-373)||(15121895-15121960)
chr7 (296-373)||(40074707-40074784)
chr7 (296-373)||(5893354-5893431)
chr7 (264-368)||(26199176-26199281)
chr7 (267-373)||(36933791-36933898)
[»] chr1 (4 HSPs)
chr1 (264-373)||(27109391-27109500)
chr1 (264-373)||(39629180-39629290)
chr1 (311-363)||(14351756-14351808)
chr1 (316-373)||(32947334-32947391)
[»] chr6 (5 HSPs)
chr6 (296-373)||(34503388-34503465)
chr6 (296-373)||(22696122-22696199)
chr6 (314-373)||(14287264-14287323)
chr6 (264-353)||(24046002-24046091)
chr6 (296-341)||(13032373-13032418)
[»] chr4 (12 HSPs)
chr4 (296-373)||(12887859-12887936)
chr4 (264-373)||(28149687-28149796)
chr4 (316-373)||(8817187-8817244)
chr4 (264-359)||(37320713-37320808)
chr4 (306-371)||(51407769-51407834)
chr4 (296-373)||(23532926-23533003)
chr4 (296-373)||(50589148-50589225)
chr4 (306-370)||(3914948-3915012)
chr4 (308-360)||(24958269-24958321)
chr4 (336-373)||(18356844-18356881)
chr4 (336-373)||(18431926-18431963)
chr4 (306-372)||(2181121-2181183)
[»] chr8 (5 HSPs)
chr8 (306-373)||(20516285-20516352)
chr8 (320-373)||(19411740-19411793)
chr8 (308-373)||(19554629-19554694)
chr8 (296-360)||(20860641-20860705)
chr8 (296-360)||(5993966-5994030)
[»] chr5 (5 HSPs)
chr5 (296-360)||(7269997-7270061)
chr5 (306-373)||(9436017-9436084)
chr5 (336-373)||(27632629-27632666)
chr5 (313-363)||(12155787-12155837)
chr5 (297-367)||(36608306-36608376)
[»] scaffold0009 (1 HSPs)
scaffold0009 (296-356)||(53805-53865)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 394
Target Start/End: Complemental strand, 51057615 - 51057226
Alignment:
Q  8 cgaaaaatatatgcattattcactctcgatttcaatgtaaattgtcaatttaatattaatcacttgttcccaattacatcatcaaattaaaagttcccga 107  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51057615 cgaaaactatatgcattattcactctcaatttcaatgtaaattgtcaatttaatattaatcacttgttcccaattacatcatcaaattaaaagttcccga 51057516  T
Q  108 atacatttttcacagtcatgagtacatttttaagaaaaattattattattaataatatcttttttattacgcannnnnnnnnaataaatatactatttaa 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||         ||||||||||||||||||    
T  51057515 atacatttttcacagtgatgagtacatttttaagaaaaattattattattaataatatcttttttactacgca-ttttttttaataaatatactatttaa 51057417  T
Q  208 attcatttgtcattgtcaaattcccttgccaccttgccatataaag----nnnnnnnnngttgaagaagccaaaatggaatttattggacgccaatgagt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||| ||| ||||||||    
T  51057416 attcatttgtcattgtcaaattcccttgccaccttgccatataaagtaattttttttttgttgaagaagccaaaatggaatttattgaacgacaatgagt 51057317  T
Q  304 cataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgtccgtacccaaacccctcaccc 394  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||| |||||||||    
T  51057316 cataaccagcacaaggaatgttagactaggattcgaaaggtagcaacatacaaagaaaaacaaaagttgtacgtgcccaaaaccctcaccc 51057226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 17114109 - 17114077
Alignment:
Q  343 gtagcaacatacaaaggaaaacaaaagttgtcc 375  Q
    |||||||||||||||||||||||||||||||||    
T  17114109 gtagcaacatacaaaggaaaacaaaagttgtcc 17114077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 25498446 - 25498491
Alignment:
Q  328 actaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    ||||||| || ||| ||||||||||||||||||||| |||||||||    
T  25498446 actaggagtcataaagtagcaacatacaaaggaaaataaaagttgt 25498491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 38258421 - 38258494
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaag 369  Q
    |||||| ||||||||||||||||||||| ||||||  || ||| || | ||||| ||| |||| ||||||||||    
T  38258421 caatgattcataaccagcacaaggaatgctagactgagagtcgaaaagaagcaatatataaagaaaaacaaaag 38258494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 1242307 - 1242384
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    ||||||||  |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1242307 caatgagttctaaccagcacaaagaatgctagactaggattcctaaggtagcaacatacaaaggaaaacaaaagttgt 1242384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 3258135 - 3258058
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| || |||||||||||||||||| |||| ||||| ||  || ||||||||||||||||||||| |||||||||    
T  3258135 caatgactcctaaccagcacaaggaatgctagattaggagtccaaaagtagcaacatacaaaggaaaataaaagttgt 3258058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 5050983 - 5051047
Alignment:
Q  308 accagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttg 372  Q
    |||||||||||||||| |||  || || |||||| ||||||||||||||||||||||||||||||    
T  5050983 accagcacaaggaatgataggttaagagtcgtaaagtagcaacatacaaaggaaaacaaaagttg 5051047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 36592552 - 36592615
Alignment:
Q  306 taaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||||||||||||||| |||||||||| ||||||   || |||||||||| |||||||||||||||    
T  36592552 taaccagcacaaggaatgctagactaggagtcgtaa---agtaacatacaaa-gaaaacaaaagttgt 36592615  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 1894778 - 1894832
Alignment:
Q  306 taaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaagga 360  Q
    ||||||||||||||| |||||| |||||| || || |||||||||| ||||||||    
T  1894778 taaccagcacaaggagtgttaggctaggagtcttacggtagcaacaaacaaagga 1894832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 38531986 - 38531934
Alignment:
Q  311 agcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaa 363  Q
    ||||||||||| | |||||||||| || ||| |||||||||||||||| ||||    
T  38531986 agcacaaggaacgctagactaggagtcttaaagtagcaacatacaaagaaaaa 38531934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 15121960 - 15121895
Alignment:
Q  308 accagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  15121960 accagcacaaggaatgctagactaggagtcgtaaggtagcaacatacaaaggaaaataaaagttgt 15121895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 40074784 - 40074707
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    ||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  40074784 caatgagtcctaacctgcaaaatgaatgttagactaggattcgtaaggtagcaacatataaaggaaaacaaaaattgt 40074707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 5893431 - 5893354
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| || |||||||||||||||||  |||| ||||| |||||| ||||||||||||||||||||| |||||||||    
T  5893431 caatgaatcctaaccagcacaaggaatactagaataggagtcgtaaagtagcaacatacaaaggaaaataaaagttgt 5893354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 26199176 - 26199281
Alignment:
Q  264 ttgaagaagccaaaatggaatttattggacgc-caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaa 362  Q
    ||||||||| ||||||||||||||||  |    |||||| || |||| ||||||||||||| |||||||||| |||||| ||||||| ||||||||||||    
T  26199176 ttgaagaagtcaaaatggaatttattaaaattacaatgaatcctaacaagcacaaggaatgctagactaggagtcgtaaagtagcaatatacaaaggaaa 26199275  T
Q  363 acaaaa 368  Q
    | ||||    
T  26199276 ataaaa 26199281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 36933791 - 36933898
Alignment:
Q  267 aagaagccaaaatggaatttattggacgc-caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaaca 365  Q
    |||||||||||||||||||||||  |  | |||||| || |||| ||||||||||||| |||  ||||| |||||| ||||||| |||||||  | ||||    
T  36933791 aagaagccaaaatggaatttattaaaatcacaatgaatcctaactagcacaaggaatgctaggataggagtcgtaaagtagcaaaatacaaaaaagaaca 36933890  T
Q  366 aaagttgt 373  Q
    ||||||||    
T  36933891 aaagttgt 36933898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 373
Target Start/End: Original strand, 27109391 - 27109500
Alignment:
Q  264 ttgaagaagccaaaatggaatttattggacgc-caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaa 362  Q
    |||||||||||||||| |||||||||  |  | ||||||||| ||||||||||||| |||| ||||| |||| |||| ||||| | ||||||||||||||    
T  27109391 ttgaagaagccaaaatagaatttattaaaatcacaatgagtcctaaccagcacaagaaatgctagacaaggagtcgt-aggtaactacatacaaaggaaa 27109489  T
Q  363 acaaaagttgt 373  Q
    |||||||||||    
T  27109490 acaaaagttgt 27109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 373
Target Start/End: Original strand, 39629180 - 39629290
Alignment:
Q  264 ttgaagaagccaaaatggaatttattggacgc-caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaa 362  Q
    |||||||||| |||||||||||||||  |  | |||||| || |||||||||||||||||| ||||  || | |||||| ||||||||||||||| ||||    
T  39629180 ttgaagaagctaaaatggaatttattaaaatcacaatgattcctaaccagcacaaggaatgctagatcagaagtcgtaaagtagcaacatacaaaagaaa 39629279  T
Q  363 acaaaagttgt 373  Q
    | |||||||||    
T  39629280 ataaaagttgt 39629290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 14351808 - 14351756
Alignment:
Q  311 agcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaa 363  Q
    ||||||||||||| |||||||||| || ||| |||||||||||||||||||||    
T  14351808 agcacaaggaatgctagactaggaatcttaaagtagcaacatacaaaggaaaa 14351756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 32947391 - 32947334
Alignment:
Q  316 aaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| | |||| ||||| |||||| ||||||||||||||||||||| |||||||||    
T  32947391 aaggaaggctagattaggagtcgtaaagtagcaacatacaaaggaaaataaaagttgt 32947334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 34503465 - 34503388
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| || ||||||||| |||||||| ||| |||||| |||||| |||||||||||||| ||||||||||||||||    
T  34503465 caatgaatcctaaccagcagaaggaatgctaggctaggagtcgtaaagtagcaacatacaatggaaaacaaaagttgt 34503388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 22696122 - 22696199
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| ||||| |||| |||||||||| ||||||| || | |||| ||||||||||||||| |||||||||||||||    
T  22696122 caatgaatcatatccagtacaaggaatgctagactaagagttgtaaagtagcaacatacaaaagaaaacaaaagttgt 22696199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 14287264 - 14287323
Alignment:
Q  314 acaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||||||||| ||||| ||||||||| ||||||||||| |||||| ||||||||||||    
T  14287264 acaaggaatgtttgactaagattcgtaaagtagcaacatataaaggataacaaaagttgt 14287323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 353
Target Start/End: Complemental strand, 24046091 - 24046002
Alignment:
Q  264 ttgaagaagccaaaatggaatttattggacgccaatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacata 353  Q
    |||| |||||||||||| ||||||||  |   |||||| || | ||||||||||||||||||||| || || |||||| |||||||||||    
T  24046091 ttgatgaagccaaaatgaaatttattaaatcacaatgaatcctgaccagcacaaggaatgttagaatatgagtcgtaaagtagcaacata 24046002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 13032373 - 13032418
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaa 341  Q
    |||||| || ||||||||||||| ||||||||| ||||||||||||    
T  13032373 caatgaatcctaaccagcacaagaaatgttagaataggattcgtaa 13032418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 12887859 - 12887936
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| || |||| ||||||||||||| |||||||||  |||||| ||||||||||| |||||||||||||||||||    
T  12887859 caatgaatcctaacaagcacaaggaatggtagactaggggtcgtaaagtagcaacatataaaggaaaacaaaagttgt 12887936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 28149796 - 28149687
Alignment:
Q  264 ttgaagaagccaaaatggaatttattggacgc-caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaa 362  Q
    |||||||||| ||||| |||||||||  |  | ||||||||| |||||||||||||||||| |||||||||| |  |  || ||||||||||||||||||    
T  28149796 ttgaagaagctaaaattgaatttattaaaatcacaatgagtcctaaccagcacaaggaatgctagactaggagt-tttggggagcaacatacaaaggaaa 28149698  T
Q  363 acaaaagttgt 373  Q
    |||||||||||    
T  28149697 acaaaagttgt 28149687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 8817187 - 8817244
Alignment:
Q  316 aaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    ||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||    
T  8817187 aaggaatgttagactaggagtcgtaaaatagcaacatacaaaggaaaataaaagttgt 8817244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 359
Target Start/End: Original strand, 37320713 - 37320808
Alignment:
Q  264 ttgaagaagccaaaatggaatttattggacgc-caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaagg 359  Q
    |||||||||||||||| |||||||||  |  | ||||||||| ||||||| ||||||| || |||||||||| ||||||| ||||||||||||||||    
T  37320713 ttgaagaagccaaaatagaatttattaaaatcacaatgagtcctaaccagtacaaggagtgctagactaggaatcgtaag-tagcaacatacaaagg 37320808  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 51407834 - 51407769
Alignment:
Q  306 taaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagtt 371  Q
    ||||||||| |||||||| |||||||||| ||||||  ||||||||||||||| |||| |||||||    
T  51407834 taaccagcataaggaatgctagactaggagtcgtaaaatagcaacatacaaagaaaaataaaagtt 51407769  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 23532926 - 23533003
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    ||||||||| ||||||||| |||||||| |||| || ||||||| | |||| | |||||||||||||| |||| ||||    
T  23532926 caatgagtcctaaccagcataaggaatgctagattatgattcgttaagtagtatcatacaaaggaaaataaaatttgt 23533003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 50589148 - 50589225
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    ||||||||| ||||||||| ||| |||| ||||||||||||||| | |||||||| ||||| | |||| |||| ||||    
T  50589148 caatgagtcctaaccagcataagaaatgctagactaggattcgttaagtagcaacgtacaaggaaaaataaaatttgt 50589225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 3914948 - 3915012
Alignment:
Q  306 taaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagt 370  Q
    |||| |||||||||| ||  ||| ||||| ||| || ||||||||||||||||||||||||||||    
T  3914948 taacaagcacaaggagtgccagattaggagtcgaaaagtagcaacatacaaaggaaaacaaaagt 3915012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 24958321 - 24958269
Alignment:
Q  308 accagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaagga 360  Q
    |||||||||||||||| ||| |||||| || ||| ||||||||||||||||||    
T  24958321 accagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaagga 24958269  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 18356844 - 18356881
Alignment:
Q  336 tcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  18356844 tcgtaaagtagcaatatacaaaggaaaacaaaagttgt 18356881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 18431963 - 18431926
Alignment:
Q  336 tcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  18431963 tcgtaaagtagcaatatacaaaggaaaacaaaagttgt 18431926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 2181183 - 2181121
Alignment:
Q  306 taaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttg 372  Q
    |||| ||||||||||||| |||||||||| ||||||   || |||||||||| ||||||||||||||    
T  2181183 taactagcacaaggaatgctagactaggagtcgtaa---agtaacatacaaa-gaaaacaaaagttg 2181121  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 20516285 - 20516352
Alignment:
Q  306 taaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||||||||||||||| ||||||| || |||||  ||||||||||||||| |||||||||||||||    
T  20516285 taaccagcacaaggaatgctagactaagagtcgtagagtagcaacatacaaacgaaaacaaaagttgt 20516352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 373
Target Start/End: Complemental strand, 19411793 - 19411740
Alignment:
Q  320 aatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||| |||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  19411793 aatgctagactaggagtcgtaaagtagcaacatacaaaggaaaataaaagttgt 19411740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 19554629 - 19554694
Alignment:
Q  308 accagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||| |||||| |||| |||| ||||| |||||| ||||||||||||||||||||| |||||||||    
T  19554629 accaacacaagaaatgctagattaggagtcgtaaagtagcaacatacaaaggaaaataaaagttgt 19554694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 20860641 - 20860705
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaagga 360  Q
    |||||| || ||||||||||||||| |||||| | |||| || ||| ||||||||||||||||||    
T  20860641 caatgaatcttaaccagcacaaggagtgttaggcgaggagtcttaaagtagcaacatacaaagga 20860705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 5993966 - 5994030
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaagga 360  Q
    |||||| || ||| ||||||||||| || ||| |||||| || ||| ||||||||||||||||||    
T  5993966 caatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaagga 5994030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 7269997 - 7270061
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaagga 360  Q
    |||||| || |||||||||||||||||| ||| |||||| || ||| ||||||||||||||||||    
T  7269997 caatgaatcttaaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaagga 7270061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 9436017 - 9436084
Alignment:
Q  306 taaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| || ||||||||||| | ||||| |||||| ||||||||||| |||| ||||||||||||||    
T  9436017 taaccaacataaggaatgttatattaggagtcgtaaagtagcaacatataaagaaaaacaaaagttgt 9436084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 27632666 - 27632629
Alignment:
Q  336 tcgtaaggtagcaacatacaaaggaaaacaaaagttgt 373  Q
    |||||| |||||||||||||||||||||||||||||||    
T  27632666 tcgtaaagtagcaacatacaaaggaaaacaaaagttgt 27632629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 12155787 - 12155837
Alignment:
Q  313 cacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaa 363  Q
    ||||||||||| |||||||||| || ||| |||||||||||||||| ||||    
T  12155787 cacaaggaatgctagactaggaatcttaaagtagcaacatacaaagaaaaa 12155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 36608376 - 36608306
Alignment:
Q  297 aatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaaaggaaaacaaa 367  Q
    ||||| || ||||||||||||||||||||||||||  | |  ||| ||||||||||| |||| ||||||||    
T  36608376 aatgaatcctaaccagcacaaggaatgttagactaaaagttataaagtagcaacatataaagaaaaacaaa 36608306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 53805 - 53865
Alignment:
Q  296 caatgagtcataaccagcacaaggaatgttagactaggattcgtaaggtagcaacatacaa 356  Q
    |||||| ||||||||||||||| |  |||||| |||||| |||||| ||||||||||||||    
T  53805 caatgaatcataaccagcacaatgcgtgttaggctaggagtcgtaaagtagcaacatacaa 53865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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