View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_low_19 (Length: 392)
Name: NF17043_low_19
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 45458640 - 45458269
Alignment:
| Q |
8 |
tgttatgtcacttagttgttgacgagaaagtgcacctatagattcagacattcatctatcagtcattgcattcgcattgcttagcaaatgtaattataaa |
107 |
Q |
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| T |
45458640 |
tgttatgtcacttagttgttgacgagaaagtgcacctatagattcagacattcatctatcagtcattgcattcgcattgcttagcaaatgtcattataaa |
45458541 |
T |
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| Q |
108 |
aatatcaatcaatattaattataacaatgaaggcctaaacaaagcaacataaagaaagccatgaagtacaccaattcgttttataatgattatta-ttta |
206 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45458540 |
aatatcaatcaatattaatcataacaatgaaggcctaaacaaagcaacataaagaaagccatgaagtacaccaattcgttttataatgattattatttta |
45458441 |
T |
|
| Q |
207 |
tagttggacattggatccataaggaaaagagtgaaagatgatgataactttgtcatgaagggtttttgtgatcaatacctctgctcttaatatcactatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45458440 |
tagttggacattggatccataaggaaaagagtgaaagatgatgataactttgtcatgaagggtttttgtgatcaatacctctgctcttaatatcactatt |
45458341 |
T |
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| Q |
307 |
ggaatatgactgttttgcttccatacttgtccattgaagaaggaccctacacgttttcctgggtttctttct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45458340 |
ggaatatgactgttttgcttccatacttgtccattgaagaaggaacctacacgttttcctgggtttctttct |
45458269 |
T |
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