View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17043_low_21 (Length: 385)

Name: NF17043_low_21
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17043_low_21
NF17043_low_21
[»] chr1 (1 HSPs)
chr1 (1-361)||(37853462-37853823)
[»] chr8 (2 HSPs)
chr8 (27-66)||(41580373-41580412)
chr8 (24-66)||(40618772-40618814)
[»] chr5 (1 HSPs)
chr5 (24-66)||(12443960-12444002)
[»] chr3 (1 HSPs)
chr3 (24-66)||(32033741-32033783)
[»] chr4 (2 HSPs)
chr4 (24-68)||(15726553-15726597)
chr4 (26-66)||(24859322-24859362)


Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 37853462 - 37853823
Alignment:
Q  1 aaaaaatagaatttacaatcataatatccaaaaactgatccaaattaaaccatattaaattggatcaannnnnnn-gtattactcatcgaaaaccaaatc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  37853462 aaaaaatagaatttacaatcataatatccaaaaactgatccaaattaaaccatattaaattggatcaattttttttgtattactcatcgaaaaccaaatc 37853561  T
Q  100 aaattacgagtaattttatctt-atagatcatataaatttttgacccaccaacattccaaatcataccgtgagcacccatatctaggagtattgagaagc 198  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37853562 aaattacgagtaattttatctttatagatcatataaatttttgacccac-aacattccaaaccataccgtgagcacccatatctaggagtattgagaagc 37853660  T
Q  199 accgtgatcaacaaccggctaatgatctaggattaccaaccaaagacattaataattatgagtcatttttaagacattaataatttaataattatgagtc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853661 accgtgatcaacaaccggctaatgatctaggattaccaaccaaagacattaataattatgagtcatttttaagacattaataatttaataattatgagtc 37853760  T
Q  299 atttttcttacgatagtaagaacgaagagctgttcttaaaattatactcaagaactatatata 361  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853761 ctttttcttacgatagtaagaacgaagagctgttcttaaaattatactcaagaactatatata 37853823  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 41580373 - 41580412
Alignment:
Q  27 tccaaaaactgatccaaattaaaccatattaaattggatc 66  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  41580373 tccaaaaaccgatccaaattaaaccacattaaattggatc 41580412  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 40618814 - 40618772
Alignment:
Q  24 atatccaaaaactgatccaaattaaaccatattaaattggatc 66  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||    
T  40618814 atatctaaaaaccgatccaaattaaaccgtattaaattggatc 40618772  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 12443960 - 12444002
Alignment:
Q  24 atatccaaaaactgatccaaattaaaccatattaaattggatc 66  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||    
T  12443960 atattcaaaaaccgatccaaattaaaccgtattaaattggatc 12444002  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 32033783 - 32033741
Alignment:
Q  24 atatccaaaaactgatccaaattaaaccatattaaattggatc 66  Q
    |||||||||||| |||||||||||||||  |||||||||||||    
T  32033783 atatccaaaaaccgatccaaattaaaccgcattaaattggatc 32033741  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 15726597 - 15726553
Alignment:
Q  24 atatccaaaaactgatccaaattaaaccatattaaattggatcaa 68  Q
    |||||||||||| ||||||||||||||| |||||  |||||||||    
T  15726597 atatccaaaaaccgatccaaattaaaccgtattagtttggatcaa 15726553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 24859322 - 24859362
Alignment:
Q  26 atccaaaaactgatccaaattaaaccatattaaattggatc 66  Q
    ||||||||||||||||||||||||||  ||||| |||||||    
T  24859322 atccaaaaactgatccaaattaaaccgcattaatttggatc 24859362  T

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